Pairwise Alignments

Query, 653 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  185 bits (469), Expect = 5e-51
 Identities = 123/391 (31%), Positives = 204/391 (52%), Gaps = 17/391 (4%)

Query: 259 EQIQQRTDLAAQTHQKIDTVQHAIAGLEPVVRAQHGKIQGEVRLMQGVMIGLILLIALLI 318
           E ++Q  D A Q  + I     + A L P++            ++  V++ L  L  +  
Sbjct: 163 ELVKQLGDAAVQRSETIRADAQSTASLGPLIM-----------ILASVVVALFSLWLV-- 209

Query: 319 DTLQRRLARVLTNLAPALSTWAEGDFSQPIALGKTNRELHDIEASLNRLRAYLVDLVGTI 378
               RR+   + +L   ++  ++G F+  +   + + EL  +  + N LR +L D    +
Sbjct: 210 ---NRRIIEPIRSLIEHIARLSQGKFADRVDASRAD-ELGRLAVAANVLRDFLADTFTRL 265

Query: 379 RGNAEEVVGSSRALAELSSGLHDGAERQAGDTAQIRDSLGELEATIQQVAGDASQAAGAS 438
           + +   +  +S  L+ ++  + DG   Q   T Q+  ++ E+ AT Q+V+  A++AA A+
Sbjct: 266 QQSTSNLDSASGELSAIARLMADGTREQFSRTDQVATAMHEMSATAQEVSRHAAEAAQAA 325

Query: 439 RSAGQAVEQGQRVIGLSLTGLHALVGEVQQNAQMIEKLAEESATIGGVLTVIRSIADQTN 498
            +A  + +QG+ V+  ++  +  + GE+   A++I +L  +S  IG VL VIR IADQTN
Sbjct: 326 DAADHSAQQGEAVMRATIATITDVSGEIASTAEVIRRLEGDSGRIGKVLEVIRGIADQTN 385

Query: 499 LLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAGATAEIQSLIAGLQSAAHQSVQGMR 558
           LLALNAAIEAARAG+AGRGFAVVADEVR+LAQRTA +TAEI  +I  +Q+ A  +V+ + 
Sbjct: 386 LLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTAESTAEIHQIIDTVQTGASNAVRAIE 445

Query: 559 AQVEHAEATAQQAQAADGALDEIVGAIQTISETAVRIADVTAQQSGAVSEIRDNSERIHQ 618
           +    +E    Q   A   L  I  A++ I +   +IA    +Q+    +I  N   I  
Sbjct: 446 SGQARSEQGVGQVTEAGLMLQRITEAVEAIRDMNRQIATAAEEQTAVAEDISRNITEITS 505

Query: 619 MGEDNLLRIGQGRSQGEHLLVLGGQLNTAVQ 649
           +   N   + +  +  ++L  L  QL    Q
Sbjct: 506 IATINQQNVERTETASQNLHGLSAQLTEVTQ 536



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 85/399 (21%), Positives = 159/399 (39%), Gaps = 54/399 (13%)

Query: 12  LLLVAVCLALGATLWWSQRALERPYLLMERYLGLSQTFQNQAARNIDDYLASGDALRLSS 71
           ++L +V +AL +    ++R +E    L+E    LSQ    + A  +D   A  +  RL+ 
Sbjct: 194 MILASVVVALFSLWLVNRRIIEPIRSLIEHIARLSQ---GKFADRVDASRAD-ELGRLAV 249

Query: 72  ASQSLESLLQQLDELPADLAQNLRPSLVDLDVFSKTALLAAGKLAGDPQALLLQAERELG 131
           A+  L   L       AD    L+ S  +LD        A+G+L+   + L+    RE  
Sbjct: 250 AANVLRDFL-------ADTFTRLQQSTSNLDS-------ASGELSAIAR-LMADGTREQF 294

Query: 132 ANLEQLS--QYAISVNSPEAARYLPPLLAASQHLGKLSLARDKLVTSGRAELADDVEREV 189
           +  +Q++   + +S  + E +R+      A+      S  + + V         DV  E+
Sbjct: 295 SRTDQVATAMHEMSATAQEVSRHAAEAAQAADAADH-SAQQGEAVMRATIATITDVSGEI 353

Query: 190 SNIRSQADLLEQLPLLGVKASAESSADDFSALMGLENTGKTEAQDTGVDLKRELNSLLTR 249
           +   S A+++ +L     +  +         + G+ +     A +  ++  R        
Sbjct: 354 A---STAEVIRRL-----EGDSGRIGKVLEVIRGIADQTNLLALNAAIEAARA-GDAGRG 404

Query: 250 YPAELKRTREQIQQRTDLAAQTHQKIDTVQHAIAGLEPVVRAQHGKIQGEVRLMQGVMIG 309
           +       R   Q+  +  A+ HQ IDTVQ    G    VRA      G+ R  QGV  G
Sbjct: 405 FAVVADEVRTLAQRTAESTAEIHQIIDTVQ---TGASNAVRAIE---SGQARSEQGV--G 456

Query: 310 LILLIALLIDTLQRRLARVLTNLAPALSTWAEGDFSQPIALGKTNRELHDIEASLNRLRA 369
            +    L++  +   +   + ++   ++T AE   +    + +   E+  I A++N    
Sbjct: 457 QVTEAGLMLQRITEAV-EAIRDMNRQIATAAEEQTAVAEDISRNITEITSI-ATIN---- 510

Query: 370 YLVDLVGTIRGNAEEVVGSSRALAELSSGLHDGAERQAG 408
                    + N E    +S+ L  LS+ L +  +R AG
Sbjct: 511 ---------QQNVERTETASQNLHGLSAQLTEVTQRLAG 540