Pairwise Alignments

Query, 653 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  181 bits (460), Expect = 7e-50
 Identities = 135/409 (33%), Positives = 201/409 (49%), Gaps = 11/409 (2%)

Query: 252 AELKRTREQIQQRTDLAAQTHQKI-------DTVQHAIAGLEPVVRAQHGKIQGEVRLMQ 304
           A +K T   +QQ   L+A+ +  +       D +Q A+   E   R     +Q EV +  
Sbjct: 270 AYVKGTEFSVQQGQALSARGNVVVSGLYKAQDEIQTALQN-ELNTRYDALVLQREVVIAM 328

Query: 305 GVMIGLILLIALLIDTLQRRLARVLTNLAPALSTWAEGDFSQPIALGKTNRELHDIEASL 364
            V++GL+LL A    ++ R L   + +L        EGD S  +A+   + E+ DI   L
Sbjct: 329 CVIMGLLLLYAFC--SIYRALRLTIDSLLGVTRRLGEGDLSARVAVVSKD-EVADIANGL 385

Query: 365 NRLRAYLVDLVGTIRGNAEEVVGSSRALAELSSGLHDGAERQAGDTAQIRDSLGELEATI 424
           N +       +  +   + E+   +  L             Q  +T Q+  ++ E+ A++
Sbjct: 386 NLMADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINEMTASV 445

Query: 425 QQVAGDASQAAGASRSAGQAVEQGQRVIGLSLTGLHALVGEVQQNAQMIEKLAEESATIG 484
             VA +   AA A+  A  A   G R++  + + + AL  EV+ +AQ ++ LA  S +IG
Sbjct: 446 ADVAQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALHSQSIG 505

Query: 485 GVLTVIRSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAGATAEIQSLIA 544
           GV+ VI +IADQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RT  +T EI+ +I 
Sbjct: 506 GVIQVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEIRGIIQ 565

Query: 545 GLQSAAHQSVQGMRAQVEHAEATAQQAQAADGALDEIVGAIQTISETAVRIADVTAQQSG 604
            LQSA   +VQ M+A  + A A    A  A G+L  I   ++ I E   +IA    QQ  
Sbjct: 566 QLQSATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAAVQQHA 625

Query: 605 AVSEIRDNSERIHQMGEDNLLRIGQGRSQGEHLLVLGGQLNTAVQAFRV 653
              +I  N   I       +L I       + L  +   +   V  F++
Sbjct: 626 VSEDINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRNVVARFKL 674



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 65/295 (22%), Positives = 111/295 (37%), Gaps = 57/295 (19%)

Query: 13  LLVAVCLALGATLWWSQRALERPYLLMERYLGLSQTFQNQAARNIDDYLASGDALRLSSA 72
           +++A+C+ +G  L ++  ++ R   L                  ID  L  G   RL   
Sbjct: 324 VVIAMCVIMGLLLLYAFCSIYRALRL-----------------TIDSLL--GVTRRLGEG 364

Query: 73  SQSLESLLQQLDELPADLAQNLR-------PSLVDLDVFSKTALLAAGKLAGDPQALLLQ 125
             S    +   DE+ AD+A  L         S+  +D  S      A +L     A +  
Sbjct: 365 DLSARVAVVSKDEV-ADIANGLNLMADAFASSISHMDRTSYELTDVASRLG----ASIGL 419

Query: 126 AERELGANLEQLSQYAISVNSPEAARYLPPLLAASQHLGKLSLARDKLVTSGR------- 178
           A++ + A   +  Q A ++N   A+     +   +Q+    +LA D+  T+ R       
Sbjct: 420 AKQSMNAQQAETEQVATAINEMTAS-----VADVAQNTEGAALAADEANTASRNGLRIMH 474

Query: 179 ------AELADDVEREVSNIRSQADLLEQLPLLGVKASAESSADDFS--ALMGLENTGKT 230
                   LA++VE     +++ A  L    + GV     + AD  +  AL       + 
Sbjct: 475 QAHSTIQALAEEVELSAQKVQALA--LHSQSIGGVIQVISTIADQTNLLALNAAIEAARA 532

Query: 231 EAQDTGVDLKR-ELNSLLTRYPAELKRTR---EQIQQRTDLAAQTHQKIDTVQHA 281
             Q  G  +   E+ +L +R  A  +  R   +Q+Q  TD A Q  Q      HA
Sbjct: 533 GEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQLQSATDAAVQQMQAGQQKAHA 587