Pairwise Alignments

Query, 653 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  184 bits (466), Expect = 1e-50
 Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 11/355 (3%)

Query: 306 VMIGLILLIALLIDT-----LQRRLARVLTNLAPALSTWAEG--DFSQPIALGKTNRELH 358
           +MIG I   A LI T     + + + R +     AL+  AEG  D ++ I + K+  E+ 
Sbjct: 284 IMIGFI---AFLIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEV-KSKDEIA 339

Query: 359 DIEASLNRLRAYLVDLVGTIRGNAEEVVGSSRALAELSSGLHDGAERQAGDTAQIRDSLG 418
            +  + NR    +   V  +  +   +  S+  ++ +++     A+RQ  +T Q+  ++ 
Sbjct: 340 QLALAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMN 399

Query: 419 ELEATIQQVAGDASQAAGASRSAGQAVEQGQRVIGLSLTGLHALVGEVQQNAQMIEKLAE 478
           E+ AT+Q+VA +A+ AA A+  A ++ E G+ ++   ++ +  L  E+   A+ I +L  
Sbjct: 400 EMAATVQEVAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELER 459

Query: 479 ESATIGGVLTVIRSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTAGATAE 538
            +A I  VL VIR+IADQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RT  +T+E
Sbjct: 460 NTAQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSE 519

Query: 539 IQSLIAGLQSAAHQSVQGMRAQVEHAEATAQQAQAADGALDEIVGAIQTISETAVRIADV 598
           IQ +I  LQ +A  +V  M       +        A  AL+ I  A+ TIS+  ++IA  
Sbjct: 520 IQQMIEALQHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASA 579

Query: 599 TAQQSGAVSEIRDNSERIHQMGEDNLLRIGQGRSQGEHLLVLGGQLNTAVQAFRV 653
             +Q    +EI  N   I+ +  +      Q    G+ L  L  +L T +  FR+
Sbjct: 580 ANEQCAVSAEINKNVNNINDITINATESAVQTARAGDELAQLSMRLTTLLAQFRI 634