Pairwise Alignments
Query, 923 a.a., histidine kinase from Pseudomonas simiae WCS417
Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B
Score = 300 bits (769), Expect = 4e-85
Identities = 192/542 (35%), Positives = 309/542 (57%), Gaps = 21/542 (3%)
Query: 365 LLMSLALGERQRAIVEARFSLSRDLAASNAEIAAKAEFLAKISHEIRTPMNGVLGMTELL 424
++MS+A R + + + + D A+N AK++FLA +SHEIRTPMN ++GM++L
Sbjct: 1006 VVMSIANITRLKLLSDELMAAKEDADAANQ---AKSDFLANMSHEIRTPMNAIIGMSQLC 1062
Query: 425 LGTPLSVKQRDYVQTIHSAGNELLTLINEILDISKLESGQIELDDVQFDLNALIEDCLSI 484
L T L KQR+YV+ I A LL +IN+ILD SK+E+G+++++ V F L+ ++ED +
Sbjct: 1063 LQTELDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDM 1122
Query: 485 FRAKAEQQNVELISFIQPQVPRVISGDPTRLRQAMLSLLENALQKTDEGEVLIVVA-LDD 543
F KA + +EL+ + P VP + GDP RL Q +++L+ NA++ T+ GEV++ ++ L
Sbjct: 1123 FSVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELAR 1182
Query: 544 RSTKPRLRIAVQDSGLPMEAAERDALLHSELHSKNFFSATRLNG--HLGLVIARQLILLM 601
+ +L+ AV+DSG+ + A ++ L S S+ S TR G LGL I +QL+ LM
Sbjct: 1183 DEDQVQLKFAVRDSGIGLTAEQQAKLFKS--FSQADTSTTRKYGGTGLGLAICKQLVELM 1240
Query: 602 NGEFGIKSGSHQGSTLWLTLPLDPERLEHPTSDLDGPLKGARVLVVDDNDTCRKVLVQQC 661
GE G+ S GST + T+ + + ++ +++ L+G VLVVDDN T R +L
Sbjct: 1241 GGEIGVDSQFGNGSTFYFTVSV--KVAQNAQLNVEQELEGMAVLVVDDNSTARDILRTTL 1298
Query: 662 SAWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLLDQNMPGMTGMQLAAKIKEDPSLNHD 721
+ G +V + SG EAL K RDY + L+D MP M G + AA+++E L
Sbjct: 1299 QSMGFSVDSARSGMEAL----EKCAERDY-RIALIDWKMPEMDGTETAARMRE---LKQP 1350
Query: 722 ILLIMLTGISNAPSKIIARNCGIKRILAKPVAGYTLKTTLADELTQRSKGNVPPRPVLNT 781
L++M++ +N+ GI + KP++ L + L ++ V +
Sbjct: 1351 PLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMD 1410
Query: 782 PAAITVPTDFRILVAEDNSISTKVIRGMLGKLNLNPDTASNGEEALEAMKAQRYDLVLMD 841
++ RIL+ EDN ++ +V L ++ + A NG+ ALE + Q +DLVLMD
Sbjct: 1411 AQKLSGLKGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMD 1470
Query: 842 CEMPILDGFSATQQLRAWEVSHQRVRTPVVALTAHILSEHKERARQAGMDGHMAKPVELS 901
C+MP++DG+ AT++LR PVVA+TA+ ++ KE AGM+ H+AKP+E+
Sbjct: 1471 CQMPVMDGYQATRELRKLP---GLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVG 1527
Query: 902 QL 903
L
Sbjct: 1528 IL 1529
Score = 63.5 bits (153), Expect = 1e-13
Identities = 34/128 (26%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 793 ILVAEDNSISTKVIRGMLGKLNLNPDTASNGEEALEAMKAQRYDLVLMDCEMPILDGFSA 852
+LV +DNS + ++R L + + D+A +G EALE + Y + L+D +MP +DG
Sbjct: 1281 VLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTET 1340
Query: 853 TQQLRAWEVSHQRVRTP--VVALTAHILSEHKERARQAGMDGHMAKPVELSQLRELVEFW 910
++R ++ P ++ ++AH SE ++ + G++G++ KP+ S+L + +
Sbjct: 1341 AARMR-------ELKQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSA 1393
Query: 911 VAQRQQRP 918
+ ++ +P
Sbjct: 1394 LGRQGHKP 1401
Score = 57.0 bits (136), Expect = 1e-11
Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 44/289 (15%)
Query: 520 LSLLENA-LQKTDEGEVLIVVALDDRST-KPRLRIAVQDSGLPMEAAERDALLHSELHSK 577
+ + +NA L E E + V+ +DD ST + LR +Q G +++A + +
Sbjct: 1262 VKVAQNAQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAER 1321
Query: 578 NF------FSATRLNGHLGLVIARQL----ILLM-----NGEFGIKSGSHQGSTLWLTLP 622
++ + ++G R+L ++LM N EF I G ++T P
Sbjct: 1322 DYRIALIDWKMPEMDGTETAARMRELKQPPLILMVSAHANSEF-IDKVEEMGINGYITKP 1380
Query: 623 LDPERL----------------EHPTSDLDGP----LKGARVLVVDDNDTCRKVLVQQCS 662
+ RL +D LKG R+L+V+DN+ ++V +
Sbjct: 1381 ISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKGKRILLVEDNEMNQEVASEFLE 1440
Query: 663 AWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLLDQNMPGMTGMQLAAKIKEDPSLNHDI 722
G+ +S +G+ AL L ++ FD+VL+D MP M G Q ++++ P L ++
Sbjct: 1441 QVGVVLSIADNGQIALEKLGQQS-----FDLVLMDCQMPVMDGYQATRELRKLPGLA-EL 1494
Query: 723 LLIMLTGISNAPSKIIARNCGIKRILAKPVAGYTLKTTLADELTQRSKG 771
++ +T + A K + G+ +AKP+ L TL L +KG
Sbjct: 1495 PVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYLCPEAKG 1543