Pairwise Alignments

Query, 923 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  290 bits (741), Expect = 7e-82
 Identities = 178/525 (33%), Positives = 299/525 (56%), Gaps = 37/525 (7%)

Query: 392  SNAEIAAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLI 451
            ++A   AK +FLA +SHEIRTPMN ++GM++L L T L  KQ++Y++ I  A   LL++I
Sbjct: 1033 ADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLLSII 1092

Query: 452  NEILDISKLESGQIELDDVQFDLNALIEDCLSIFRAKAEQQNVELISFIQPQVPRVISGD 511
            N+ILD SK+E+G++++++V F L+ ++ED   +F  +A Q+ +EL+  + P VPR + GD
Sbjct: 1093 NDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGD 1152

Query: 512  PTRLRQAMLSLLENALQKTDEGEVLIVVAL-DDRSTKPRLRIAVQDSGLPMEAAERDALL 570
            P RL Q +++L+ NA++ T+ GEVL+ ++L + ++    LR +V+DSG+ +   ++  L 
Sbjct: 1153 PLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLF 1212

Query: 571  HSELHSKNFFSATRLNG--HLGLVIARQLILLMNGEFGIKSGSHQGSTLWLTLPL---DP 625
             S   +    S TR  G   LGL I++QL+ LM G  G++S    GST + T+ L     
Sbjct: 1213 KSFTQADT--STTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSG 1270

Query: 626  ERLEHPTSDLDGPLKGARVLVVDDNDTCRKVLVQQCSAWGLNVSAVPSGKEALALLRTKA 685
            ++L      +   L G  +LV DDN T R ++     + G NV  V SG EA+       
Sbjct: 1271 QKL-----FVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCS--- 1322

Query: 686  HLRDYFDVVLLDQNMPGMTGMQLAAKIKEDPSLNHDILLIMLTGISNAPSKIIARNCGIK 745
              +  + V L+D  MP + G++ A +IK+       IL  M++  +N          G+ 
Sbjct: 1323 --QQEYAVALIDWKMPNLDGIETAKQIKQQTKNAPRIL--MVSAHANQDFLTQIEQLGLA 1378

Query: 746  RILAKPVAGYTLKTTLADEL-------TQRSKGNVPPRPVLNTPAAITVPTDFRILVAED 798
              ++KP++   L   + + L        +R + N+ P  +L            RIL+ ED
Sbjct: 1379 GYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLPLKGK-------RILLVED 1431

Query: 799  NSISTKVIRGMLGKLNLNPDTASNGEEALEAMKAQRYDLVLMDCEMPILDGFSATQQLRA 858
            N ++ +V    L ++ +    A+NG+ AL+ +  Q +DLVLMDC+MP++DG+ AT+ +R 
Sbjct: 1432 NEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIRQ 1491

Query: 859  WEVSHQRVRTPVVALTAHILSEHKERARQAGMDGHMAKPVELSQL 903
                 +  + PV+A+TA+ ++  KE   +AGM+ H+AKP+E++ L
Sbjct: 1492 ---RPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLL 1533