Pairwise Alignments

Query, 689 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 84/429 (19%), Positives = 163/429 (37%), Gaps = 51/429 (11%)

Query: 281 LDKVEAQVYYNYADHVMDNYSLRTPSGTGMMAGPMASNVDRR-------TLGARIKATWR 333
           +D +E + Y+   +++     L     +G  AG ++   + R        LGA + A   
Sbjct: 296 MDTLEGKFYWRSTENITQTNRLMANDRSG--AGILSYRRELRDEGFNDEALGATLNAQKE 353

Query: 334 WADV----QLISGLDAQTNEH------RQRSSMGIDTYKDLPRVKDANFHNYGVFGELTW 383
           W       Q   G+    +++      R+  S G D   D P    A  + +GV+G+   
Sbjct: 354 WQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEP-FAPAREYRFGVYGQDNL 412

Query: 384 YAADRDRLITGARLD--RASAKDFRQTSGSGMMKRPNPTADDTRADTLPSGFVRYEHDLA 441
              D   L  G R D  + S K+  +  G  ++   +       ++  PS  + Y+    
Sbjct: 413 LLGDWT-LAAGLRFDAQKLSPKNTDRIHGYKVVTMGS-------SEWSPSASISYQWH-- 462

Query: 442 DSPTTLYAGLGHSERFPDYWELFSPNTGATGSVNAF-----DGVKPEKTTQLDFGAQYKA 496
                 Y    H  R P Y + +  +  +   +  F     + ++ E +   + G++Y  
Sbjct: 463 -PEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNKLRAETSDSFELGSKYDN 521

Query: 497 DDLEAWASGYIGRVQDFI---LFDYRPGMMGTTSQARNV-DARIMGGELGAAYKLTQNWK 552
              + + + +     +FI      Y         Q +N+   +  G E+   ++L   W 
Sbjct: 522 GQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWS 581

Query: 553 ADATLAYAWGKNSSDGKALPQMPPLDARLGLTYSEDDWSAGALWRVVAAQNRIDQNKGNV 612
            +  L Y  GK+  + + +  + PL+  + L Y  + W A +     +A +R+       
Sbjct: 582 VENKLGYVDGKD-GENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRV-PTCTTE 639

Query: 613 VGKDYD--KSSGFGVFSLNAAYRVNKHFKVSTGVDNLFGKAYAEHLNLAGNAGFGYPASD 670
            GK+ +   ++G+  + +   Y+ N     S  V NL  + Y  + ++A     G   SD
Sbjct: 640 QGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDREYTRYQDVA-----GVTPSD 694

Query: 671 PQAIKEPGR 679
                EPGR
Sbjct: 695 TLYSTEPGR 703



 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 59/233 (25%), Positives = 86/233 (36%), Gaps = 30/233 (12%)

Query: 13  TPVLAAFCGALLAPHVQADEHTEHELTPTVITAIAPSSPLTVITNPKDPRQPVPASDGG- 71
           +PV AA    L A    A+    H     V+TA     PL+ +       +       G 
Sbjct: 4   SPVSAAVLSVLAAGFAHAETEPSH-YEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGK 62

Query: 72  ----DYLKTIPGFALVRNGGTNGDPVLRGMFGSRLNILTNGSMMLGACPGRMDAPTSY-- 125
               D L   PG ++    G   +  +RGM G+R+ I+ +G        G  D    Y  
Sbjct: 63  TELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGY-GAADINDKYGR 121

Query: 126 --ISPETYDKLTVIKGPQTVLWGPGASAGTILFE-REPEEFGELGTRLNASVLAGSNGRF 182
              S     ++ V+KG  + L+G GA  G ++ E + PE++  L  R             
Sbjct: 122 NTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDY--LYHR------------- 166

Query: 183 DKVIDAAAGGPLGYVRVIGNQAHADDYKDGNNDTVASRYDKWNGDVAVGFTPD 235
           D  +DAA        R  GN A A  + DG         D W G+    F  D
Sbjct: 167 DYYVDAALTYSGISNRYQGNHALAMRHGDGE---ALLTIDYWQGEETRNFNQD 216