Pairwise Alignments

Query, 336 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 347 a.a., transport system permease protein (RefSeq) from Shewanella loihica PV-4

 Score =  264 bits (674), Expect = 3e-75
 Identities = 149/330 (45%), Positives = 216/330 (65%), Gaps = 10/330 (3%)

Query: 8   LLLAALGAVLLVSCVLSLGFGPARVPVEVVWRIVLYKAFGVGEVNWPAG-QEHIVWLIRV 66
           L    LG + L + VL++ FG A++ V  V  ++L K  G      P G    I+  +R+
Sbjct: 18  LAFVCLGLLTLATPVLAVSFGAAQIGVAEVLEVLLAKLSGAD----PGGVTARILIELRL 73

Query: 67  PRMLLGALVGAGLALIGAVLQAVTRNPLADPHLLGVTSGATLGAVIVVLHVGEVIGLLT- 125
           PR+LL  + G GLAL GAVLQ VTRNPLADP+L G++SGA+LGAV+V+  +G V G L  
Sbjct: 74  PRILLAFIAGFGLALAGAVLQTVTRNPLADPYLFGISSGASLGAVVVITLLGGVGGALAS 133

Query: 126 --LPLAAFIGALLSMLVVLAVASRNGRLESDRLLLCGVAVSFVMMAAANLLLFMGDHRAA 183
             LPL AFIGA L++L+VLA+  R+   + +R+LL GVA+SF+  A A+L+L+    ++A
Sbjct: 134 VGLPLGAFIGASLAVLMVLALCGRDLNTQIERMLLSGVAISFLFGALASLMLYFSGPQSA 193

Query: 184 SAVMFWMLGGLGLARWELLAVPTATVLLGLGLLLGMARPLNALMAGEQTAVTLGLNARNV 243
           ++V+FW LG    A W++L +P   VL    +LL + R + A+ AG++TA TLG+  + +
Sbjct: 194 ASVLFWSLGSFAKASWQMLWLPWLLVLAASAILLLLKRQILAIQAGDETAHTLGIRVQRL 253

Query: 244 RLKVFLVASLMTGVLVSISGSIGFVGLMVPHIARRLVGAEHRRLLPVCVLLGSLFLVWVD 303
           RL   L+ SL+T VLV+  G IGFVGLMVPH+ R L+      LL    L+G LF++WVD
Sbjct: 254 RLVSLLLCSLITAVLVANCGGIGFVGLMVPHMVRLLLPGRFALLL--TALVGGLFMIWVD 311

Query: 304 VAARTLIAPEDLPIGVATAAIGGLFFIGLM 333
           V AR L++ ++LP+G+ TA IG LFF+ ++
Sbjct: 312 VLARCLLSYQELPVGIITAVIGSLFFLFIL 341