Pairwise Alignments

Query, 290 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 291 a.a., preprotein translocase subunit Tim44 from Vibrio cholerae E7946 ATCC 55056

 Score =  139 bits (349), Expect = 1e-37
 Identities = 104/298 (34%), Positives = 156/298 (52%), Gaps = 19/298 (6%)

Query: 1   MKRFLSIAMALCIGLTMSLDANAKRFGGGKSSGAAPTHQTSQMAPSAGATGGAAATAGAA 60
           MKR  S+   + + + ++  A AK+FGGGKS G   +++T+  AP             AA
Sbjct: 1   MKRLFSLIALIMVSVAVTPIAEAKKFGGGKSFGNN-SYKTAP-APKQQQQKNDTVKNDAA 58

Query: 61  GAAGAAAKAGGASRWLGPLAGIAAGGLLASMFMGGGFQGMQIFDILILAVIAFVIFR--- 117
             A +A K        G L G+ AGGLLA+ F GG F+G+Q  DILI+ +IAFVIF+   
Sbjct: 59  NPASSAKKGLMG----GLLGGLLAGGLLAAFF-GGAFEGIQFMDILIMGLIAFVIFKLMR 113

Query: 118 -FIAARRRK-QQEHLAPAGAPMQREVFEQKPAMG-----SIFGGSAAPAAARPVINAPAW 170
            F+A+++    Q    PA + M R  FEQ          S+ GG  + A +    N PA 
Sbjct: 114 AFLASKQGSINQSQQQPAYSGMNRTPFEQPNVHNFEQPQSMGGGFGSAAQSDVPHNYPAG 173

Query: 171 FNEERFVEAARSHFQSLQQHWDANEMDKISEFVTPQLLEFLKRERADLGDGFQSTYIDDL 230
           F+   FV  AR H++ LQ  W+ N+++ I E+V+P L E LK ERA+  +G Q T +  +
Sbjct: 174 FDRVAFVNGAREHYRILQGAWNHNQLETIREYVSPSLFEDLKAERANY-EGDQHTDVMYV 232

Query: 231 RVQLEGVDDRADKTIATLTFSGVSKTSRFDQGEVFSESWNMER-AQGDNQPWLVAGIR 287
             ++   D  A++   +L FSG  + +     E   + W++ER     N PWL+ GI+
Sbjct: 233 DAEIVRADYDANRAQLSLQFSGRYRDAVEGIEENIEDVWHLERDLTVPNAPWLIVGIQ 290