Pairwise Alignments

Query, 276 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 223 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  141 bits (355), Expect = 1e-38
 Identities = 89/235 (37%), Positives = 129/235 (54%), Gaps = 15/235 (6%)

Query: 43  LSFDLKFSIILDKLPNLVGLHLAPNGFLQGAALTVFLCLCAIVASSILGFVTALGRLSKS 102
           + FD  F  +L+ LP L          L+    T+ +    +V + IL    A  R+ K 
Sbjct: 1   MGFD--FHYMLELLPIL----------LKYLGTTLEMASWGLVFALILALFLANIRVFKV 48

Query: 103 AVAFGIASFYASFFRGTPLLIQILLIYLGLPQL-GLVPG--AIVAGIIALSLNYGAYLSE 159
            V   ++  Y SFFRGTPLL+Q+ L+Y GLPQ+  L+ G  A  A +I L+L++ AY++E
Sbjct: 49  PVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHFAAYMAE 108

Query: 160 IFRAGILGVPHGQREAALALGMRDSVIFWHVTLPQAMRTIIPPATNQFISMLKDSSLISV 219
             RA I+G+   Q EA+L++GM  S     + LPQA R  +P   N FI M+K +SL   
Sbjct: 109 SIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFT 168

Query: 220 MGVWEVMFLAQSYGRSSYRYIEMLTTAAIIYWVMSLGLELIQARMERHYGKGYVR 274
           +GV E+M  AQ    SS+R+ E     A+IYWV+ L L  +Q+  E+   K Y R
Sbjct: 169 LGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKAYAR 223