Pairwise Alignments

Query, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  157 bits (398), Expect = 3e-43
 Identities = 101/359 (28%), Positives = 179/359 (49%), Gaps = 22/359 (6%)

Query: 4   LKSLVLCAAVISGMAHAEEKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIFDTNEALE 63
           +K LVL A V S   +AE+ TL VY W  Y+  K+L+ F+ Q   + + Y  F+ NE++ 
Sbjct: 5   IKGLVLSAVVASSQVYAEQ-TLNVYAWGGYLPEKSLKAFEQQEG-VTINYSTFENNESMY 62

Query: 64  AKL-LTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEANDPGNK 122
            KL L    GYDVV  S  F+ K    G+   +D +Q+ N K   P ++ L  A+DP NK
Sbjct: 63  TKLKLLKGTGYDVVFASAYFIEKMGREGLLAEIDHNQIPNMKDAMPTVLGL--AHDPQNK 120

Query: 123 FAVPYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDSPSEILP 182
           F++PY++G   + +N   +    G+    D WD  ++++         V L+D   ++  
Sbjct: 121 FSLPYIWGITGLYYNSSTLPN--GITKWADLWDKQYEQQ---------VMLIDDIRDVFG 169

Query: 183 LALQHLGLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMADIANGDICVAVGYSGSFS 242
           +AL+  G   N+ N ++  KA   L+ ++  V  ++S        +G+  + + ++G+  
Sbjct: 170 MALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAY 229

Query: 243 QAANRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAPIS 302
           Q      + K        +P+EGA +W D   IP G+KN   A+ FIN++ QP+  A I 
Sbjct: 230 QGQVEMPELK------FVMPEEGAVLWMDNFTIPSGSKNIPLAHKFINFMYQPENQAEIV 283

Query: 303 DFVGYPNPNKDATEQVDPSIRNNPNLYPTEAAMATLYTLKPLGRDAERARTRAWSKIKS 361
             +GY +  K     +   +R+NP ++P++  M     +  +G +      + W ++++
Sbjct: 284 QSLGYASATKGGRALLPAELRDNPTIFPSDEDMKKGEFINDVGPETLAIYEKYWQRLRN 342