Pairwise Alignments

Query, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  194 bits (493), Expect = 3e-54
 Identities = 114/335 (34%), Positives = 186/335 (55%), Gaps = 20/335 (5%)

Query: 2   NMLKSLVLCAAVI-SGMAHAEEKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIFDTNE 60
           N L +  LCAA + +  A A+++ L  YNW +YI  + LEDF  +   IK++Y  +++NE
Sbjct: 3   NKLFASALCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETG-IKVIYSTYESNE 61

Query: 61  ALEAKLLTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEANDPG 120
           ++ AKL T  AGYD+VVPS  F++K  + G+ Q +D S+L ++K LDP  +   +  DPG
Sbjct: 62  SMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPG 119

Query: 121 NKFAVPYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDSPSEI 180
           NKF++PY++G   IG N D +      N   D WD  +  +         + L+D   E+
Sbjct: 120 NKFSIPYIWGATGIGINTDMLDKKSLKNWG-DLWDAKWAGQ---------LMLMDDAREV 169

Query: 181 LPLALQHLGLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMADIANGDICVAVGYSGS 240
             +AL  LG  PN++NPK+   A   L K+ P V  F+S         G++ + + ++GS
Sbjct: 170 FHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGS 229

Query: 241 FSQAANRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAP 300
              A       + G  + +  P++G   W D ++IP GAKN + A+  I++LL+P+  A 
Sbjct: 230 AYMAR------QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAK 283

Query: 301 ISDFVGYPNPNKDATEQVDPSIRNNPNLYPTEAAM 335
           I+  +GYP P K A + +     N+P++YP ++ +
Sbjct: 284 IALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVI 318