Pairwise Alignments

Query, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 366 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score =  402 bits (1032), Expect = e-116
 Identities = 199/367 (54%), Positives = 267/367 (72%), Gaps = 5/367 (1%)

Query: 1   MNMLKSLVLCAAVISGMAHAE----EKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIF 56
           M +LK +   A V +G+  +     E+ +RVYNW DYI    L +F+ +   IK++YD+F
Sbjct: 1   MKLLKKMTTLALVTAGVFTSSVVSAEEVVRVYNWSDYIAEDTLANFEKETG-IKVIYDVF 59

Query: 57  DTNEALEAKLLTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEA 116
           D+NE +EAKLL+G +GYD+VVPSN FLAKQI+AG FQ LD+SQL N K+L+P+LMK +E 
Sbjct: 60  DSNEVVEAKLLSGRSGYDIVVPSNNFLAKQIKAGAFQKLDQSQLTNHKNLNPELMKQLET 119

Query: 117 NDPGNKFAVPYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDS 176
            DP N+ AVPY++GT  IG+N  KVK  LG +APVDS +LIF  +   K+ +CG +LLDS
Sbjct: 120 ADPRNEHAVPYLWGTTGIGYNEAKVKQVLGEDAPVDSLELIFNPKYAEKIAKCGFSLLDS 179

Query: 177 PSEILPLALQHLGLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMADIANGDICVAVG 236
             E+LP+A+ +LGLDPNS+  +DYAKA  ++ KIRP+VTYFHSS+Y+ D+ANGDICVA G
Sbjct: 180 ADEMLPMAMIYLGLDPNSTKSEDYAKAGEVMAKIRPFVTYFHSSRYITDLANGDICVAFG 239

Query: 237 YSGSFSQAANRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQ 296
           YSG   QAA RA +A+NG  +   +PKEG+ +WFDMLAIP  AKN ++A+TFINYLL+P+
Sbjct: 240 YSGDVFQAAARAEEAENGNVIGYAIPKEGSNLWFDMLAIPADAKNVKNAHTFINYLLRPE 299

Query: 297 VIAPISDFVGYPNPNKDATEQVDPSIRNNPNLYPTEAAMATLYTLKPLGRDAERARTRAW 356
           VIAPI+++V Y NPN  A E VD  IRN+  +YPT   ++ LY        A+RA TR W
Sbjct: 300 VIAPITNYVAYANPNVPAQELVDEEIRNDAAIYPTPEVLSRLYVADVRPMKAQRAMTRVW 359

Query: 357 SKIKSGI 363
           +K+KSG+
Sbjct: 360 TKVKSGM 366