Pairwise Alignments

Query, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 387 a.a., extracellular solute-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score =  395 bits (1014), Expect = e-114
 Identities = 200/359 (55%), Positives = 265/359 (73%), Gaps = 6/359 (1%)

Query: 6   SLVLCAAVISGMAHAEEKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIFDTNEALEAK 65
           +LV   A+ S  A AEE  +RVYNW DYI    LE+FK +   I+++YD+FD+NE LEAK
Sbjct: 32  ALVTAGALASVAAQAEE-VVRVYNWSDYIAEDTLENFKKETG-IRVIYDVFDSNEVLEAK 89

Query: 66  LLTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEANDPGNKFAV 125
           LL+G +GYD+VVPSN FLAKQI+AG F+PLDRS+L N+K+L+  LMK +E  DPGN++AV
Sbjct: 90  LLSGRSGYDIVVPSNHFLAKQIKAGAFKPLDRSKLSNFKNLNADLMKQLEKADPGNQYAV 149

Query: 126 PYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDSPSEILPLAL 185
           PY++GT  IG+N DKVKAA+G +AP DS +LIF  +   K+ +CG A+LDS  +++P A+
Sbjct: 150 PYLWGTNGIGYNIDKVKAAVGEDAPFDSMELIFNPKYAEKISKCGFAMLDSADDMVPQAM 209

Query: 186 QHLGLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMADIANGDICVAVGYSGSFSQAA 245
            +LGLDPNS+  +DY KA  LL KIRPYVTYFHSS+Y++D+ANGDICVA G+SG   QAA
Sbjct: 210 IYLGLDPNSTKAEDYEKAGELLEKIRPYVTYFHSSRYISDLANGDICVAFGFSGDVFQAA 269

Query: 246 NRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAPISDFV 305
            RA +A NG  +   +PKEGA +WFDMLAIP  A N ++A+  INYLL+P+VIAPIS++V
Sbjct: 270 ARADEAGNGNKIGYSIPKEGANLWFDMLAIPADAANVENAHKLINYLLRPEVIAPISNYV 329

Query: 306 GYPNPNKDATEQVDPSIRNNPNLYPTEAAMATLY--TLKPLGRDAERARTRAWSKIKSG 362
            Y NPN  A   VD +IRN+P +YP +  +  LY   ++PL    +R  TR W+K+KSG
Sbjct: 330 AYANPNDPAQPLVDEAIRNDPAIYPPKEVLDKLYIGEIRPL--KIQRVLTRVWTKVKSG 386