Pairwise Alignments

Query, 314 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 381 a.a., molecular chaperone DnaJ from Vibrio cholerae E7946 ATCC 55056

 Score =  170 bits (430), Expect = 6e-47
 Identities = 127/366 (34%), Positives = 175/366 (47%), Gaps = 77/366 (21%)

Query: 1   MDFKDYYKILGVEPTADDKEIKAAYRKLARKYHPD-VSKEKDAEAKFKDASEAYEALKSA 59
           M  +D+Y++LGV   A +++IK AY++LA KYHPD  S +  A  KFK+  EAYE L  A
Sbjct: 1   MSKRDFYEVLGVGRDASERDIKKAYKRLAMKYHPDRNSGDAGAAEKFKEVKEAYEILTDA 60

Query: 60  DKRAEYDELRKYGQHGQPFQGPPGWQSRGGFGGGG-GGGGEDFSDFFSSIFGSRGDAFGG 118
            K+A YD+   YG     F+     Q  GGFGGGG GGGG DF D F  +F   GD FGG
Sbjct: 61  QKKAAYDQ---YGH--AAFE-----QGAGGFGGGGFGGGGADFGDIFGDVF---GDIFGG 107

Query: 119 GQR--RPAGRKGQDVEMQLSVFLEETLSTESKQISFQVPQY------DASGRHVSNTTKS 170
           G+R   P  ++G D+   + + LEE +   SK+I  +VP        D SG     + ++
Sbjct: 108 GRRGGGPRAQRGSDLRYNMELSLEEAVRGCSKEI--EVPTLVHCDACDGSGAKKGTSAQT 165

Query: 171 LN------------------------------VKIPAGVVN------------------- 181
                                           +K P  V +                   
Sbjct: 166 CGTCHGHGQVQMRQGFFAVQQTCPTCHGKGKIIKDPCNVCHGQGRKQKTKTLNVKIPAGV 225

Query: 182 --GERIRLKGQGAPGVGGGANGDLYLIVKFAPHPKFEVDGENLIINLPLAPWELALGAEV 239
             G+RIRL G+G  G  G   GDLY+ V    H  FE DG NL   +P++    ALG EV
Sbjct: 226 DTGDRIRLSGEGEAGEMGAPAGDLYVQVHVKEHHIFERDGNNLYCEVPVSFAMAALGGEV 285

Query: 240 AVPTLTGKINLKVPAGSQNGQRMRAKGHGLLN-KAGQRGFLYVQLKAVMPPAGNDEVKAL 298
            VPTL G+++LKVPA +Q G+  R +G G+   ++   G L V+L    P   +   K L
Sbjct: 286 EVPTLDGRVSLKVPAETQTGRMFRMRGKGVKGVRSAALGDLIVKLVVETPVNLSARQKEL 345

Query: 299 WQELAQ 304
            +E  +
Sbjct: 346 LKEFEE 351