Pairwise Alignments

Query, 314 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 333 a.a., chaperone DnaJ (NCBI) from Rhodospirillum rubrum S1H

 Score =  144 bits (364), Expect = 2e-39
 Identities = 101/331 (30%), Positives = 162/331 (48%), Gaps = 45/331 (13%)

Query: 4   KDYYKILGVEPTADDKEIKAAYRKLARKYHPDVSK-EKDAEAKFKDASEAYEALKSADKR 62
           KD Y+ILGV   A   +I+ AYRKLA+  HPD+   +  A A F++ + A++ L  + KR
Sbjct: 3   KDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSAKR 62

Query: 63  AEYD--ELRKYGQHGQPFQ-----GPPG-----------WQSRGGFGGGGGGGG----ED 100
           A +D  E+   G    P +     G PG           +   G  GG G   G    ED
Sbjct: 63  ARFDRGEIDASGAERAPERPSSAPGGPGSGASSRYYYRDYADAGATGGYGTTAGFEDFED 122

Query: 101 FSDFFSSIFGSRGDAFGGGQRRPAGRKGQDVEMQLSVFLEETLSTESKQISFQVPQYDAS 160
            SD FS+         G G+ R   R G+D+   L++   +  +   K+++         
Sbjct: 123 LSDLFSA---------GLGRGRKGPRPGRDLRFHLTLDFLDAANGLRKRVTLP------- 166

Query: 161 GRHVSNTTKSLNVKIPAGVVNGERIRLKGQGAPGVGGGANGDLYLIVKFAPHPKFEVDGE 220
                     L++ IP G  +GE +RLKG+GAPG+ GG  GD  + +   PHP F+ DG+
Sbjct: 167 ------DGPVLDLTIPPGTRDGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGD 220

Query: 221 NLIINLPLAPWELALGAEVAVPTLTGKINLKVPAGSQNGQRMRAKGHGLLNKAGQRGFLY 280
           +++I +P+   E  LG ++ VPT++GK+ + +P G+ +G  +R +G G+       G   
Sbjct: 221 DIVIEVPITLDEAVLGGKIEVPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQR 280

Query: 281 VQLKAVMPPAGNDEVKALWQELAQKAAFNPR 311
           V LK  +PPA +  +     +  +   ++PR
Sbjct: 281 VILKIALPPAIDGALANFLSQWRKDHPYDPR 311