Pairwise Alignments

Query, 429 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 257 a.a., type IV secretion protein DotU from Vibrio cholerae E7946 ATCC 55056

 Score =  118 bits (296), Expect = 2e-31
 Identities = 70/220 (31%), Positives = 104/220 (47%)

Query: 46  NPLESAAGPLLALLTRLRNTIAHPAPASLRAQLLAYLRQFEERAEAAGIARNEVLLARYA 105
           N L  AA PL  L  R+R          +  Q +  ++  E      G     ++  RY 
Sbjct: 37  NVLIDAATPLFGLSLRVRTLTECDNIEQIYRQTIEEIKAIEIELTEQGYEHAILMAYRYI 96

Query: 106 LCTALDEAVLSTPWGSTSDWGKQSLLITVHNEAWGGEKVFQLLDHCLQSPRERLYLLELL 165
           LC  LDE+V+ T WG++S W + S+L   HNE WGGEKVF +L      P     LL  +
Sbjct: 97  LCAFLDESVMGTEWGASSLWAEHSMLSRFHNETWGGEKVFTILSRLEGEPHRYQALLAFI 156

Query: 166 YLCMCLGFEGRYRVMNDGRSQLETLRERTAAAIRSARGEHERELSPHWRGVTVARDRLAQ 225
           Y C+ LGFEG+YRVM  G+++ E +  R    + S      ++L+     V  A+  L++
Sbjct: 157 YHCLILGFEGKYRVMEGGQAEREKVISRLHQLLSSLEESEPQDLTRPTDHVVRAKYTLSR 216

Query: 226 FMPPWIAVAIGVALLLALLFGLRLKLASDAEPVFKNIHAL 265
            MP W   A  + L + L  G    L S +  V   ++ +
Sbjct: 217 QMPVWSVFAGFIVLWVGLFLGYSYVLHSKSSDVLNQLNQI 256