Pairwise Alignments

Query, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

Subject, 1181 a.a., type VI secretion system membrane subunit TssM from Vibrio cholerae E7946 ATCC 55056

 Score =  402 bits (1034), Expect = e-116
 Identities = 327/1200 (27%), Positives = 535/1200 (44%), Gaps = 100/1200 (8%)

Query: 19   IALSLIIWFVGPLLDV------------LVPEGRRWALIILVFAVWIAYRVFRIIQARRQ 66
            I L++ IW+ GP L+V            +V         + V+ +W  +R  +  ++ ++
Sbjct: 29   ILLNVAIWWAGPWLEVAGYKPLESIMARVVASSLFTLGCLAVWGIW-QWRKLQAFKSEQK 87

Query: 67   AAEVMRSLAAETPADPNSVATAEELTTLRQRMDEALALLKKAKLGGDERRNLYELPWYVI 126
              E +R        DP  V    +   L Q M      L K          LY LPWY++
Sbjct: 88   REEQLRQ-------DPIKVYEQRQEVELNQVMLNMKQSLNK-------HNYLYALPWYLV 133

Query: 127  IGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAGRYTTQD 186
            +G   +GKT+ +  SG +F  ++ + A   +      + DWW  D++VL+D  G   TQ 
Sbjct: 134  LGLENAGKTSLINRSGQNFVFSSVMRASGQKSEN-PYSFDWWIGDESVLIDPDGELLTQG 192

Query: 187  SNS-----TVDKAAWLGFLDLLKKQRSRRPIDGAFIAISLSDLLLGTDAERAAHAAAIRL 241
            + S      +++  WL F+D L + RSRRP++G  +A+ ++ L   T +ER A+A  +R 
Sbjct: 193  NRSEENDGALERRLWLHFVDWLDRTRSRRPLNGIVLALDVAHLATATASERKAYANLLRA 252

Query: 242  RIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQVWGMTFALDDGKNTDSPL 301
            R++EL   L  R P+Y+ LTKLDL+ GF  FF + +K +R +V G TF++D   N DS L
Sbjct: 253  RLRELMETLSTRLPVYIALTKLDLLHGFEPFFKHYTKSQREEVLGFTFSMDSVDNLDSWL 312

Query: 302  AHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNA 361
                SE+     R+N  L   +        R+ IY F +Q   LK+ LQ F +     + 
Sbjct: 313  EEFASEYTQFVSRVNGMLPHAVAAPMTLEERNAIYSFTRQISGLKEILQQFFQEALASDQ 372

Query: 362  FEERVLLRGVYFTSGTQEGSPIDRLIGAMAQSMNLDRQ-HLARQSGTGRSYFIEKLFTAV 420
            F    L+RG YFTS  Q+G P +    A ++   L    + A+++     YF +KLFT +
Sbjct: 373  FSTSALVRGAYFTSVYQQGVPTNAFDDAASRRYGLSHAINTAQRAKNSTVYFTQKLFTHI 432

Query: 421  AFAERGLVGVNPKV-ERRRKWIARGVLAATVALVVVVSSLWWVSYRANQAYIAQVDQKVA 479
             + E GL   N +V + +R+ +    +A +VA  ++++  W  +Y  N  +   V  KV 
Sbjct: 433  IYPEAGLASDNFRVAKNKRRLMGLSFVACSVA-TLLLAGTWHRNYLNNVQHADTVLTKVN 491

Query: 480  PLGQ---TVQNLSPAQRDILAVLPLLNAVKNLAG---DSPSWSEGLGLYQGDMLEAESAS 533
               +   T ++L+ +QR++L  L  +       G   D P +    GLYQG  +  +   
Sbjct: 492  QYKEQFPTSRSLA-SQREVLDPLNKIREATLEFGFFRDKPQYISDFGLYQGHTIGPKVEE 550

Query: 534  VYRKLLIAVFAPRLVTRIEEQLHGGGNSDFLYEGLKAYLMLADSEHYDPDFIKAWIALDW 593
             Y  LL   F P L+      L+     +     L+ Y ML D      D++  + A  W
Sbjct: 551  TYLNLLETRFLPLLMADTIVALNQAETDEEKLAVLRVYRMLVDKSGRYQDYVMDYFAKYW 610

Query: 594  DRNLPRDLPADQRQ---ALAGHLQSLFERHPPTA-------------RLDPRLIDDLRRQ 637
             ++      + QRQ    L GHL         TA             R   ++I   + +
Sbjct: 611  QKSF-----SGQRQIQEELLGHLDYAMRHTDLTAERLNGDKGAEQVMRPYDKVIARAQVE 665

Query: 638  LQQLPVAQRVYDRVKRQKLPEGIPDFRLNEAAGRDAALVFSRKSGKPLGEPLSGFFTAKG 697
            L  +P  QRVY  +K        P   L    G    +VF  +        +    T +G
Sbjct: 666  LGSMPNDQRVYRNLKLSAQTVLGPSVNLRSLIGPVFDVVFEERVLNSSSLFIPQMLTKRG 725

Query: 698  YRQAFLLSSLNQTGTLAEEQWVLGHE---QADQQNVVSLAADVRRLYFQDYQRQWDALLA 754
            +   F+  S + +     + WVLG     Q  + +  +L   +R LY  DY   W A L 
Sbjct: 726  FDDYFMPQSESVSELALIDSWVLGQSKTAQFSEADKQALREKIRDLYVADYTNTWRAALN 785

Query: 755  DIDFVPITSVAQAADVLRVISGPTSPLKKLLVAVAKETDLQAEERQLAAKGVPVEGGVDK 814
            +ID      +  A  VL  I+    P+++LL  +   T L +         +P +     
Sbjct: 786  EIDVKYFNDINDAVMVLENITSNLEPMQRLLRTLDDNTQLYS--------ALPKDESA-- 835

Query: 815  LKERLGSLLGQEQPAANAPAAADDPVTAHFAELNSIVSKNEGEPAAIDGLLTDMNAL--- 871
            LKE L S      P     +  + P    FA+LN ++     +PA +  +L  ++ L   
Sbjct: 836  LKELLKS------PKYKVASMIETP----FADLNGMLKPVGSKPAYMTEVLASVDELKSY 885

Query: 872  --YVQVSAMVG-ASGDALLGEAKNQAAAAATRVSLNAERQPPLVQGMVKSVVNSTTNSMM 928
               +Q +  VG A+ DA     K   A     +   +   P  +  M+  + + +   + 
Sbjct: 886  LKSIQDAPDVGMAALDATKARVKLVNADPIYTLKRISSGLPKPLDSMMAKLADESWYVVK 945

Query: 929  GGVRNQLNAAWVSEVVNVYRQSLAGRYPMSPGSARDATLDDFGQFFGVGGVMDNYFRKYL 988
                  L   W  +V   ++  LAGRYP +P S +D  L DF  FF   G +DN++ + L
Sbjct: 946  QEAIKHLEVRWTEDVYKTFQSKLAGRYPFNPASNKDVALADFEAFFAPNGTLDNFYNQQL 1005

Query: 989  QPYVDTSAQTWRWQPGAAQKLGIAPGVLQTFQRAATIRDAFFRAGGTQPIVRFELKPVSM 1048
            + ++D +         +AQ + I   VL   ++A  IR+AFF   G    V F ++P+S+
Sbjct: 1006 KMFIDENISV--ASDDSAQSI-IRKEVLDQIKQAQKIREAFFNRKGILD-VSFSVEPLSL 1061

Query: 1049 DPTITQFLLDLDGQQLSYDHGPSRPVAMQWPNP-GSIGVVRISIMPPSAS-GRSGVTLDG 1106
                 + +L++DGQ L+Y HGP   V + WPN      V +++++P   +     + + G
Sbjct: 1062 SNNKRRSVLNVDGQFLAYSHGPRENVELIWPNTLRDSAVSKVTLIPTQTNMSPRSLQIQG 1121

Query: 1107 PWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASIAYELRANSAFNPFKSRVLSGFSLPERL 1166
            PWA+FRLL+Q D+ +  S    + +  VDG  + Y + A +  NPF  R+   F L + L
Sbjct: 1122 PWAFFRLLDQGDVVSA-SQTSVDFKFIVDGGEMIYRINAEADANPFTERLFKSFKLSKTL 1180