Pairwise Alignments

Query, 466 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 833 a.a., GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 60.1 bits (144), Expect = 3e-13
 Identities = 76/272 (27%), Positives = 115/272 (42%), Gaps = 20/272 (7%)

Query: 180 TARRIQQRLEATIEIPPLADTAQKIIKLRVDPNATIDDITGVVETDPALAAQVVSWAASP 239
           T R I       +  PP+     ++++  V P   +  I  ++  DP LAA V++   SP
Sbjct: 9   TTRPIDIAACLELTFPPVT---VQLVQALVAPYPELATIGRLIAMDPVLAAAVLNLVNSP 65

Query: 240 YYASPGKIRSVEDAIVRVLGFDLVINLALGLALGKTLSLPKDHPHQST-PYWHQSIYTAA 298
           YY    ++  ++ A   VLG   V+ LAL L+  K LS       Q+    W   +++A 
Sbjct: 66  YYGLASRVADLQRA-AAVLGTREVLKLALSLSFQKKLSSAIKRSTQAMFADWRMVVWSAI 124

Query: 299 VIEGLTRAMPRAQRPEAGLTYLAGLLHNFGYLLLAHVFPPHFSLICRHLEVNPHLCHSYV 358
             E + + +      +A L YLA LL +   L L         L  R    +        
Sbjct: 125 AAEHIAQTL---CPDKAHLAYLAALLKDL-ELFLRLCLDETGPLADRTCITSLDNGQLEE 180

Query: 359 EQHLLGISREQIGAWLMRYWDMPDELSTALRFQHDPTYDGQYAEYP--NLVCLAVR---L 413
           E  L G +     A ++R W++P+EL+ A+   HD   DG     P    V LA R   L
Sbjct: 181 EGRLWGNTHPDRAADIIRQWNLPEELAEAIALHHD--LDGLDGHPPLVQSVILATRWSDL 238

Query: 414 LRSRGIGSGPDETIPDELL--ERLGLSRDKAD 443
           +  R  G+ P   I  E+L   RLGL  +  D
Sbjct: 239 IHGR--GTHPAMLIRFEMLIRARLGLGDEGMD 268