Pairwise Alignments

Query, 326 a.a., biopolymer transporter ExbB from Pseudomonas simiae WCS417

Subject, 296 a.a., MotA/TolQ/ExbB proton channel (NCBI) from Rhodospirillum rubrum S1H

 Score =  138 bits (347), Expect = 2e-37
 Identities = 98/239 (41%), Positives = 131/239 (54%), Gaps = 19/239 (7%)

Query: 50  AEQNAAAPAAPAAAPAATDPAQAADPASADETGVVLEGDNTLGMAHDLSPWGMYQNADVV 109
           A Q   AP  P    AA     A   A       V          HD S  G++  AD V
Sbjct: 39  AAQGLPAPGLPGLDTAADGSLNAVGDALGGLVAPVAPA------LHDFSALGLFLQADPV 92

Query: 110 VKAVMIGLAIASIITWTIWIAKGFELLGAKRRLRNEIVHLKKATTLKEASESATKKGTLA 169
           VK VM  L +ASI  W + + K   L+ A+R  R      ++A    + S +   KG +A
Sbjct: 93  VKGVMGLLVVASIAVWAVILDKAVRLVIARREARA----FERAVAANDLS-AVMLKGGMA 147

Query: 170 NTLV---HDALEEMRLS-ANTREKEGIKERVAFRLERLVAACGRNMSSGTGVLATIGSTA 225
            T+V   H+A ++ +   A +  ++GI+   A RL   V A  R +  G  +LA++GS A
Sbjct: 148 TTVVRSAHEAWQDYQPGEARSVRRDGIER--AMRLT--VNAELRKLEVGLPLLASVGSAA 203

Query: 226 PFVGLFGTVWGIMNSFIGIAKTQTTNLAVVAPGIAEALLATALGLVAAIPAVVIYNVFA 284
           PFVGLFGTVWGIM+SF  IA++  T+LAVVAPGIAEAL ATA+GLVAAIPAV+ +N  +
Sbjct: 204 PFVGLFGTVWGIMHSFTSIAQSNDTSLAVVAPGIAEALFATAIGLVAAIPAVLAFNALS 262