Pairwise Alignments

Query, 326 a.a., biopolymer transporter ExbB from Pseudomonas simiae WCS417

Subject, 308 a.a., MotA/TolQ/ExbB proton channel (NCBI) from Rhodospirillum rubrum S1H

 Score =  147 bits (370), Expect = 4e-40
 Identities = 101/262 (38%), Positives = 137/262 (52%), Gaps = 9/262 (3%)

Query: 55  AAPAAPAAAPAATDPAQAADPASADETGVVLEGDNTLGMAHDLSPWGMYQNADVVVKAVM 114
           ++P  PAAAP+   P  +    +A   G    G  T+G    LS W M+  AD++VK VM
Sbjct: 47  SSPPLPAAAPSV--PVASEILPNASGVGAAAPGA-TMGEKPSLSAWSMFWQADIIVKMVM 103

Query: 115 IGLAIASIITWTIWIAKGFELLGAKRRLRNEIVHLKKATTLKEASESATKKGTLANTLVH 174
           + L  ASI +WTI   K   L    ++            +L++  +   ++     T V 
Sbjct: 104 LSLVGASIWSWTIVFEKIVRLRDLNKKAEQFEEKFWSGGSLEDLFDRIGQRPRDPMTAVF 163

Query: 175 -DALEEMRLSANTRE-KEGIKERVAFRLERLVAACGRN----MSSGTGVLATIGSTAPFV 228
             A+ E R SA  R    G +  +A R+ER++          +    G LA+ G+ APFV
Sbjct: 164 VAAMREWRHSAQRRNGAAGARAMLAQRVERVMGITQNRELETLERRLGFLASTGAVAPFV 223

Query: 229 GLFGTVWGIMNSFIGIAKTQTTNLAVVAPGIAEALLATALGLVAAIPAVVIYNVFARSIA 288
           GLFGTVWGIMNSF  I  +  T+LA VAPGIAEAL ATALGLVAAIPAV+ YN  +  I 
Sbjct: 224 GLFGTVWGIMNSFHAIGMSNDTSLATVAPGIAEALFATALGLVAAIPAVIAYNKLSADID 283

Query: 289 GYKAQVSDASAEVLLLVSRDLD 310
            Y  ++   S E   ++ R LD
Sbjct: 284 RYAGRLEAFSGEFGAILGRQLD 305