Pairwise Alignments

Query, 701 a.a., (p)ppGpp synthetase from Pseudomonas simiae WCS417

Subject, 699 a.a., bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) from Shewanella amazonensis SB2B

 Score =  795 bits (2054), Expect = 0.0
 Identities = 388/697 (55%), Positives = 515/697 (73%), Gaps = 3/697 (0%)

Query: 5   DALADRLSAYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQ 64
           + L +  SAYL   QV L+++AY  A  AH+GQ R SGE Y+THP+AVA IL+DM +DH+
Sbjct: 5   EGLKESASAYLDSGQVALLKQAYQVARDAHEGQMRTSGEPYITHPVAVAKILSDMRLDHE 64

Query: 65  SLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGVSKLTQMNFETKAEAQAENFQKMAM 124
           +LMAA+LHD IEDT + KE L+  FG+ VA+LV+GVSKL ++ F  K EAQAENF+KM M
Sbjct: 65  TLMAALLHDTIEDTHVTKEDLAELFGDAVADLVEGVSKLDKLKFRDKKEAQAENFRKMMM 124

Query: 125 AMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFED 184
           AM +DIRVIL+KLADR HNMRTL  L  +KRRRIA+ETLEIYAPIANRLG+H I+ E ED
Sbjct: 125 AMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIYAPIANRLGIHNIKTELED 184

Query: 185 LGFKAMHPMRSARIYQAVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIY 244
           LGF+A +PMR   + + VK ARGNRKE++  I+  +   L    I  +V GR+K++Y IY
Sbjct: 185 LGFQAYYPMRYRVLKEVVKAARGNRKELIQNIKTGIQARLEDAGIHAKVKGREKNLYSIY 244

Query: 245 KKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKANGYQ 304
            KMRGK   F E+MD+YAFR+IVD +DTCYRVLGA+H LYKP PGRFKDYIAIPKANGYQ
Sbjct: 245 NKMRGKELQFQEVMDIYAFRVIVDSIDTCYRVLGAMHGLYKPRPGRFKDYIAIPKANGYQ 304

Query: 305 SLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVL 364
           SLHT+LFG HGVP+EIQIRT +M++MA+ G+AAHW+YK+  +     T  RAR+W++ +L
Sbjct: 305 SLHTSLFGPHGVPVEIQIRTDDMDQMADKGVAAHWVYKNGNENGSTTTQVRARKWMQSLL 364

Query: 365 EMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIMELPKGSTAVDFAYAVHTDVGNSCIA 424
           E+QQ A +S EF+E+VK +LFPDE+YVFTP+GRI+ELP G+TAVDFAY VHTDVGN+C+ 
Sbjct: 365 ELQQSASSSFEFVENVKTELFPDEIYVFTPEGRILELPVGATAVDFAYEVHTDVGNTCVG 424

Query: 425 CRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESI 484
            R+NR+  PLS+PL SG TVEI++A GA+PN AWLNFVVTGKAR  IR  LK  ++ E+I
Sbjct: 425 ARVNRQAYPLSQPLISGQTVEIITAKGAKPNAAWLNFVVTGKARAKIRQVLKNLKQDEAI 484

Query: 485 SLGERLLNKVLNGFDSALDKIPTERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRLL 544
           +LG RLLN  L   ++ LD +  E +  ++ E + + +  LL DIGLGN M+ V+A+RL 
Sbjct: 485 ALGRRLLNHALG--ENKLDSVAPELLDKVIQETKHKDLNSLLADIGLGNAMSIVIAQRLT 542

Query: 545 GEG-EQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRNITE 603
           G    +  S    + IRG EG+++S+AKCC PIPGD ++ H+S GKG+VVH++NC NI  
Sbjct: 543 GGAVPEKQSETHLMPIRGAEGMLVSFAKCCHPIPGDAVIAHVSPGKGLVVHMENCANIRG 602

Query: 604 IRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDG 663
            +  P+K I + W K    E+   LRVE+ + +G +A + S + +   NI  +S +ERDG
Sbjct: 603 YQGEPDKYIPVHWDKVDGVEYQANLRVEIVNHQGALAKITSIIASEGSNIHNLSTEERDG 662

Query: 664 RISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR 700
           R+ ++ L +SV DR+HLA V++++R L  V+R +R R
Sbjct: 663 RVYLINLRISVRDRIHLANVMRRIRVLPEVLRTSRNR 699