Pairwise Alignments

Query, 701 a.a., (p)ppGpp synthetase from Pseudomonas simiae WCS417

Subject, 701 a.a., bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) from Shewanella loihica PV-4

 Score =  793 bits (2049), Expect = 0.0
 Identities = 392/699 (56%), Positives = 515/699 (73%), Gaps = 5/699 (0%)

Query: 5   DALADRLSAYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQ 64
           + L +  S+YL   QV L+++AY  A  AH+GQ R SGE Y+THP+AVA ILADM +DH+
Sbjct: 5   EGLKESASSYLEATQVELLKQAYQVARDAHEGQMRTSGEPYITHPVAVARILADMRLDHE 64

Query: 65  SLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGVSKLTQMNFETKAEAQAENFQKMAM 124
           +LMAA+LHD IEDT + KE LS  FGE+V ELV+GVSKL ++ F  K EAQAENF+KM M
Sbjct: 65  TLMAALLHDTIEDTPVTKEELSELFGESVGELVEGVSKLDKLKFRDKKEAQAENFRKMMM 124

Query: 125 AMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFED 184
           AM +DIRVIL+KLADR HNMRTL  L  +KRRRIA+ETLEIYAPIANRLG+H I+ E ED
Sbjct: 125 AMTQDIRVILIKLADRTHNMRTLGALRPDKRRRIARETLEIYAPIANRLGIHNIKTELED 184

Query: 185 LGFKAMHPMRSARIYQAVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIY 244
           LGF+A +PMR   + + VK ARGNRKE++  IE ++   L    ++G V GR+K++Y IY
Sbjct: 185 LGFQAYYPMRYRVLKEVVKSARGNRKELIQNIEGAIKTRLEDTGLKGTVKGREKNLYSIY 244

Query: 245 KKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKANGYQ 304
            KM  K   F E+MD+YAFR+IVD +DTCYRV+GA+H LYKP PGRFKDYIAIPKANGYQ
Sbjct: 245 NKMCNKELQFQEVMDIYAFRVIVDSIDTCYRVMGAMHGLYKPRPGRFKDYIAIPKANGYQ 304

Query: 305 SLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGD-EQPKGTHARARQWVKGV 363
           SLHT+LFG HGVP+EIQIRT +M++MA+ G+AAHWLYK +G  +Q   T  RAR+W++ +
Sbjct: 305 SLHTSLFGPHGVPVEIQIRTEDMDQMADKGVAAHWLYKGAGSAQQGTTTQVRARKWMQSL 364

Query: 364 LEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIMELPKGSTAVDFAYAVHTDVGNSCI 423
           LE+QQ A  S EF+E+ K +LFP+E+YVFTP+GRI+ELP G+TAVDFAY VHTDVGN+C+
Sbjct: 365 LELQQSASTSFEFVENFKTELFPEEIYVFTPEGRILELPVGATAVDFAYEVHTDVGNTCV 424

Query: 424 ACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSES 483
             R+NR+  PLS+PL SG T+EI++A GARPN AWLNFVVTGKAR  IR  LK  +  ++
Sbjct: 425 GARVNRQAYPLSQPLISGQTIEIITAKGARPNAAWLNFVVTGKARAKIRQLLKSLKEDDA 484

Query: 484 ISLGERLLNKVLNGFDSALDKIPTERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRL 543
           + LG+RLLN  L   D  L  IP E++  ++ E +  T++ LL DIGLGN M+ V+A+RL
Sbjct: 485 VLLGKRLLNHALG--DIKLKDIPQEQIDKVVSETKHATLDSLLADIGLGNAMSIVIAQRL 542

Query: 544 LGEG-EQLPSPE-GPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRNI 601
            G+  EQ    E   + IRG EG+++S+A CC PIPGD ++ H+S GKG+VVH+++C NI
Sbjct: 543 KGDRVEQHEHKESNMMPIRGAEGMLVSFANCCRPIPGDAVIAHVSPGKGLVVHMESCANI 602

Query: 602 TEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDER 661
              +  P+K I + W      EF   LR+E+ + +G +A + S V A   NI  +S +ER
Sbjct: 603 RGYQGEPDKYIPVHWDNAEGVEFQANLRIEIVNHQGALAKITSIVAAEGSNIHNLSTEER 662

Query: 662 DGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR 700
           DGR+ ++ L +SV DRVHLA V++++R L  V+R +R R
Sbjct: 663 DGRVFLINLRISVTDRVHLANVMRRIRVLPEVLRTSRNR 701