Pairwise Alignments

Query, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas simiae WCS417

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score =  178 bits (452), Expect = 6e-49
 Identities = 175/653 (26%), Positives = 291/653 (44%), Gaps = 83/653 (12%)

Query: 1   MSRLNPRQQEAVNY--------VGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIV 52
           + +LN RQ+ AV Y          GPLL++AGAGSGKT+ +  ++AHLI   G   + I+
Sbjct: 7   LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVN-GADPRRIL 65

Query: 53  AMTFTNKAAREMKERVGTLLKGGEGRGLTVCT--------FHNLGLNIIRKEHARLGYKP 104
            MTF+ +AA EM  RV  +     GR   + T        FH +G  ++R    ++G   
Sbjct: 66  LMTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNA 125

Query: 105 GFSIFDETDVKSLMTDIMQK-EYAGDDGVDEIKNMIGAWKNDLILPAQALENARNPK--- 160
            F+I D  D   L+  I  +  ++  +     K    A  +  +     L          
Sbjct: 126 EFTIHDREDSADLINLIRHELGFSKTESRFPTKGTCLAIYSRTVNAEMRLNEVLRSWYPW 185

Query: 161 ----EQTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFEEHADILEKWQNKVRYLLVDEY 216
               EQ    ++  Y    +A N +D+DDL+L   ++  + A + +   N+  Y+LVDEY
Sbjct: 186 VAGWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSD-ASLADDIGNRFDYVLVDEY 244

Query: 217 QDTNASQYLLVKMLIGKRNQFTVVGDDDQSIYAWRGARPENLMLLKDDY-PSLKVVMLEQ 275
           QDTN  Q  ++  L       TVVGDD QSIY++R A   N++     + P+ ++V L++
Sbjct: 245 QDTNKLQSSVLLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPKQFAPAAEIVTLDR 304

Query: 276 NYRSTSRILRCANVLISNNPHEFEKQLWSEMGHGDEIRVIRCRNEDAEAERVAVEILSLH 335
           NYRST  IL  AN +I      F K LW++    +  +++  ++E  +A  +  ++L+ +
Sbjct: 305 NYRSTQPILAAANGVIDLARERFTKNLWTDRESAERPKLLTVKDEADQANCIVEQVLA-N 363

Query: 336 LRTDRPYSDFAILYRGNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVN 395
             +       A+L+R +  +  +E++L    +P+   GG  F     VKD++        
Sbjct: 364 RESGMLLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDML-------- 415

Query: 396 PDDDNAFLRVINVPR-REIGSTTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDRLA 454
                A LR    PR R  G   L+ L                  G+G     +  D +A
Sbjct: 416 -----AVLRFAQNPRDRVAGFRLLQMLP-----------------GVGPQTAGKILDTIA 453

Query: 455 RFKRFMDKVREQCAGEDPISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFL--IEA 512
                +  + E  A   P S    M + ++    LR   S+    +  M+ +W+   +E 
Sbjct: 454 ADPEPLMALGEVPA--PPRSGTDWMSL-VELLQALRKPGSA-WPTEIEMARMWYEPHLER 509

Query: 513 LKNTLEKDEDGEMTVEDAIGKLVLRD--MLERQQEEEDGAE---GVQMM--------TLH 559
           +    E      + +E        R+  + E   +  D      GV ++        T+H
Sbjct: 510 IHEDAETRRADLVQLEQIAAGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIH 569

Query: 560 ASKGLEFPYVFIMGMEEEILPHRSSIEADT---IEEERRLAYVGITRARQTLA 609
           ++KG E+  VF++ + +  +P  S +   T   +EEERRL YVG+TRA+  LA
Sbjct: 570 SAKGQEWRSVFMLNVVDGCIP--SDLATGTSHELEEERRLLYVGMTRAKDQLA 620