Pairwise Alignments

Query, 467 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 462 a.a., MATE efflux family protein from Synechococcus elongatus PCC 7942

 Score =  270 bits (691), Expect = 6e-77
 Identities = 163/429 (37%), Positives = 239/429 (55%), Gaps = 2/429 (0%)

Query: 8   RTELWAILRLSGPLIASQLAHMLMVLTDTLMMARLSPEALAGGGLGAASYSFVSIFCIGV 67
           R EL   L+L+ PL A+Q+A   +   DT+MM RL PE LA GGL +A + F+     GV
Sbjct: 5   RAELQQFLQLAIPLAAAQVAQAAVGFVDTVMMGRLGPEPLAAGGLASALFQFILATASGV 64

Query: 68  IAAVGTLVAIRHGAGDIEGATRLTQAGLWLAWLMALAAGLLLWNLKPLLLLFGQTETNVH 127
           + AV  LVA   GAG       + + GLWL+ L+ L   L++  L  L+ + GQ+ T + 
Sbjct: 65  VMAVSPLVAEAQGAGKDYKIAAIARQGLWLSVLLGLPVMLIISQLARLMPVLGQSATTIA 124

Query: 128 SAGQF-LTILPFALPGFLSFMALRGFTSAIGKAQPVMVISLGGAVANYLLNHALIEGMFG 186
            A  + + +L   +PG L F  LRG+ +A+ +A+ ++ + L G + N L N+ L  G  G
Sbjct: 125 LARDYWMAVLWGIIPG-LGFAMLRGYVAALEQARIILPLVLFGTLVNGLGNYLLGYGQLG 183

Query: 187 LPKLGLMGIGLVTAVVANGMALALMWYIHRNRTYAAYPLSTGLLRLNTQYLRELWRLGLP 246
            P+L L G+GL +A+    M L L+ Y         YP      RL     R++ +LG  
Sbjct: 184 FPRLELTGLGLSSALGLWVMFLGLLAYTAWQPKLRRYPFWQDWRRLQPSICRQILQLGWA 243

Query: 247 IGGTYAVEVGLFAFAALCMGTMGSTQLAAHQIALQIVSVAFMVPAGMSYAVTMRIGQHYG 306
           I  T AVE GLF    + MG +G   LAAHQ   Q + + FMVP G S+AVT+R+G   G
Sbjct: 244 IAVTVAVEFGLFTIITILMGAIGVEALAAHQTVSQTIILIFMVPLGCSFAVTVRVGWWLG 303

Query: 307 AGQLLQARLAGRVGIGFGAAVMLGFAAVLWLYSDPLIGLLIDHNDPAFHDVIVLAVSLLA 366
               L AR AG VG+G  A  ML  A  L L+   ++G+ +D N+P    ++ LA+ +L 
Sbjct: 304 RQDGLGARRAGLVGVGAIALWMLLLAIPLALFPRAIVGIYVDLNNPVNAGLLNLALPMLR 363

Query: 367 VAAWFELFDGVQTIAMGCIRGLKDAKTTFLIGAGCYWLIGAPSAWLMAFTLGWGPTGVWW 426
           VA+   + DGVQ +AMG + GL+D +   L+    +W++G  S+ ++ F LGWG TG+W 
Sbjct: 364 VASLALVLDGVQRVAMGALHGLQDTRIPLLLSLLAFWMVGVGSSAMLGFQLGWGSTGLWI 423

Query: 427 GLALGLACA 435
           G +LG+A A
Sbjct: 424 GQSLGVAIA 432



 Score = 34.3 bits (77), Expect = 9e-06
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 230 LRLNTQYLRELWRLGLPIGGTYAVEVGLFAFAALCMGTMGSTQLAAHQIALQIVSVAFMV 289
           LR     L++  +L +P+      +  +     + MG +G   LAA  +A  +       
Sbjct: 1   LRTIRAELQQFLQLAIPLAAAQVAQAAVGFVDTVMMGRLGPEPLAAGGLASALFQFILAT 60

Query: 290 PAGMSYAVTMRIGQHYGAGQLLQARLAGRVGIGFGAAVMLGFAAVL 335
            +G+  AV+  + +  GAG+    ++A     G   +V+LG   +L
Sbjct: 61  ASGVVMAVSPLVAEAQGAGK--DYKIAAIARQGLWLSVLLGLPVML 104