Pairwise Alignments

Query, 467 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 459 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  194 bits (494), Expect = 4e-54
 Identities = 130/429 (30%), Positives = 222/429 (51%), Gaps = 11/429 (2%)

Query: 14  ILRLSGPLIASQLAHMLMVLTDTLMMARLSPEALAGGGLGAASYSFVSIFCIGVIAAVGT 73
           +++L+ P++ +Q+   +M   DT+M  R+S   +A   +G + +    +F  G++ A   
Sbjct: 11  LIQLALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSLWLPAILFVQGLLMAFTP 70

Query: 74  LVAIRHGAGDIEGATRLTQAGLWLAWLMALAAGLLLWNLKPLLLLFGQTETNVHSAG-QF 132
           L A  +GA + +    L   G +LA +  L   + L +  PL+L     E  +++    +
Sbjct: 71  LFAHHNGANNQKAIQPLAFQGAYLALIGGLGVMVFLASA-PLVLSHMNLEPQLYNLTIGY 129

Query: 133 LTILPFALPGFLSFMALRGFTSAIGKAQPVMVISLGGAVANYLLNHALIEGMFGLPKLGL 192
           +  + +  P F+ +  LRG +  I    P MVI   G   N   N+  I G FG+P +G 
Sbjct: 130 IDGILWGAPAFVLYQVLRGCSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHFGIPAMGG 189

Query: 193 MGIGLVTAVVANGMALALMWYIHRNRTYAAYPLSTGLLRLNTQYLRELWRLGLPIGGTYA 252
            G G+ TA+V   M +A+  Y+  ++ +AA    +   R +   ++++ +LGLPI     
Sbjct: 190 AGCGIATALVFWAMLIAMAIYMQFHKKFAALAPFSQFHRPDFATMKKMTKLGLPIAMALF 249

Query: 253 VEVGLFAFAALCMGTMGSTQLAAHQIALQIVSVAFMVPAGMSYAVTMRIGQHYGAGQLLQ 312
            EV LFA  AL +  +G+T +A+HQIAL   ++ FM+P  +  AV++RIG + G  +   
Sbjct: 250 FEVSLFAIIALLLAPLGATVVASHQIALNFSAIVFMLPLSIGIAVSIRIGYYLGRDRADI 309

Query: 313 ARLAGRVGIGFGAAVMLGFAAVLWLYSDPLIGLLIDHNDPAFHDVIVLAVSLLAVAAWFE 372
           + +  +VG+    ++ L  A +  L+   +  L   ++DP   +V+VLA SL+ +AA ++
Sbjct: 310 SAVVAKVGLLLALSLALSTAILTVLFRFQIAELY--NSDP---EVVVLAGSLMLMAALYQ 364

Query: 373 LFDGVQTIAMGCIRGLKDAKTTFLIGAGCYWLIGAPSAWLMAFT----LGWGPTGVWWGL 428
           L D VQ +A G +RG KD ++ F I    YW IG    + +A+T       G  G W GL
Sbjct: 365 LSDSVQVVAAGALRGYKDTRSAFYITLFSYWGIGMSLGYTLAYTDFIVPAMGAHGFWTGL 424

Query: 429 ALGLACAAV 437
             GL  AA+
Sbjct: 425 IAGLTSAAL 433