Pairwise Alignments

Query, 467 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 109/433 (25%), Positives = 185/433 (42%), Gaps = 23/433 (5%)

Query: 14  ILRLSGPLIASQLAHMLMVLTDTLMMARLSPEALAG--GGLGAASYSFVSIFCIGVIAAV 71
           IL +S        A  ++ L D   ++ L    LA   G  G+ S+ F ++  IG+  A+
Sbjct: 15  ILVMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISF-FTTLIGIGLSIAL 73

Query: 72  GTLVAIRHGAGDIEGATRLTQAGLWLAWLMALAAGLLLWNLKP-LLLLFGQTETNVHSAG 130
           G LV+   GA D+E A RL      +  L+++   +++    P L+ L G +      A 
Sbjct: 74  GALVSRSIGAKDVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAE 133

Query: 131 QFLTILPFALPGFLSFMALRGFTSAIGKAQPVMVISLGGAVANYLLNHALIEGMFGLPKL 190
            +L IL  +LP     MAL G   ++G A+  M+ +L G   N +L+   I         
Sbjct: 134 SYLYILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIF-------- 185

Query: 191 GLMGIGLVTAVVANGMALALMWYIHRNRTYAAYPLSTGLLRLNTQY-LRELWRLGLP-IG 248
            L  +G+  A +A+ +A   ++ I        + L     R + +  L+ ++ +  P I 
Sbjct: 186 -LFAMGIEGAALASVLARITVFVIAGRGVMVKHQLLGKFNRSDFKADLKPIFAIAGPAIL 244

Query: 249 GTYAVEVGLFAFAALCMGTMGSTQLAAHQIALQIVSVAFMVPAGMSYAVTMRIGQHYGAG 308
              A  +G  AF    +   G   +A   +  ++V V F +   +S A+   +GQ++GAG
Sbjct: 245 TNIATPIGN-AFVTRAIADFGDAYVAGWAVLGRLVPVTFGMIFALSGAIGPIVGQNFGAG 303

Query: 309 QLLQARLAGRVGIGFGAAVMLGFAAVLWLYSDPLIGLLIDHNDPAFHDVIVLAVSLLAVA 368
           +  + R +    I F    ++  + +L+L    ++ L     D A   +I    S +AV 
Sbjct: 304 RFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSA--ALIEFFCSYIAV- 360

Query: 369 AWFELFDGVQTIAMGCIRGLKDAKTTFLIGAGCYWLIGAPSAWLMAFTLGWGPTGVWWGL 428
             F +F G+  +A      L  AK + L   G   L   P  ++ A  LG G  GV  G 
Sbjct: 361 --FFIFSGILFVANASFNNLGKAKYSTLFNVGKATLGTVPFVYVGA-QLG-GVYGVLIGQ 416

Query: 429 ALGLACAAVSLTW 441
            +G     V   W
Sbjct: 417 VIGSILFGVVGVW 429