Pairwise Alignments

Query, 467 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 471 a.a., Na+ driven multidrug efflux pump from Caulobacter crescentus NA1000

 Score =  124 bits (311), Expect = 7e-33
 Identities = 110/420 (26%), Positives = 177/420 (42%), Gaps = 7/420 (1%)

Query: 6   PARTELWAILRLSGPLIASQLAHMLMVLTDTLMMARLSPEALAGGGLGAASYSFVSIFCI 65
           P  T+L  +LRL+GP++ S+L  M+M LTD +++   S + L    +  A  S      +
Sbjct: 24  PIMTDLIELLRLAGPVVLSRLGIMVMGLTDAIVVGHFSAQQLGYHAMAWAPSSVFVTATV 83

Query: 66  GVIAAVGTLVAIRHGAGDIEGATRLTQAGLWLAWLMALAAGLLLWNLKPLLL-LFGQTET 124
           G++  V  + A   GAG+      + + GL  A  +   +  LL    P+ L   G  + 
Sbjct: 84  GLLVGVQVMTARAMGAGNPHETGAVLRRGLVYAGWLGFGSMALLALFGPMFLQAMGLKDG 143

Query: 125 NVHSAGQFLTILPFALPGFLSFMALRGFTSAIGKAQPVMVISLGGAVANYLLNHALIEGM 184
               A   L +   +LP +   + L  +   + +  P   +     V N   N  L+ G+
Sbjct: 144 LAEGATLPLIVFSLSLPVYAISVVLTFWLEGLSRPGPGAAMMWLANVVNLGANLLLVPGV 203

Query: 185 FGLPKLGLMGIGLVTAVVANGMALALMWYIHRNRTYAAYPLSTGLLRLNTQYLRELWRLG 244
            G P LG +G    T +    +ALAL  ++ R +      +     R     + E  R+G
Sbjct: 204 LGPPALGAVGGAWATFIARTALALALAIFVIRMKEARELGVFDKPARDRPAEI-EQRRIG 262

Query: 245 LPIGGTYAVEVGLFAFAALCMGTMGSTQLAAHQIALQIVSVAFMVPAGMSYAVTMRIGQH 304
              G +   EV  FA   L  G + +  +AA+ + L + ++ FMVP G++ A  + +G+ 
Sbjct: 263 YGAGASNFFEVSAFAGMNLICGWISAVAVAAYTVVLNVSAIIFMVPLGVASATAVMVGRA 322

Query: 305 YGAGQLLQARLAGRVGIGFGAAVMLGFAAVLWLYSDPLIGLLIDHNDPAFHDVIVLAVSL 364
           YGA        AG   I F    ++G    L LY       L    DPA    + L +  
Sbjct: 323 YGARDPAGMTRAG--WIAFAVIGVIGVLFGLLLYPTKHWVALAYTTDPA---ALALILPA 377

Query: 365 LAVAAWFELFDGVQTIAMGCIRGLKDAKTTFLIGAGCYWLIGAPSAWLMAFTLGWGPTGV 424
           L +A  F   D VQ +A   +R   +     +     Y L+  P AW +A   G G  GV
Sbjct: 378 LVLACLFFAPDAVQVVAAQALRARGEVWVPTITHLISYALVMGPLAWWLAIPKGMGLNGV 437