Pairwise Alignments

Query, 658 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  189 bits (481), Expect = 2e-52
 Identities = 121/359 (33%), Positives = 195/359 (54%), Gaps = 9/359 (2%)

Query: 296 KAEIRSVTWDVGIRLVIGSVLAMLLAVGATVWLLRSKLAPLGDLVR--QAEALGAGDLSV 353
           +A+  +  +D  I  +  SV+ ++  + A   L+   +APL  +V   QA A G GDL+ 
Sbjct: 199 RAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTA 258

Query: 354 RLNVSSHDEIGQLARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLSGGAYEGMEQQS 413
           R+ V S DEIG +A++FN   + L  +++ IR +A  V + AQ L   +  A   M+   
Sbjct: 259 RIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHC 318

Query: 414 GEITSMAGAVEEFSATSLNIADNMGSTERLAQENAQQTRIGRNSMQEASSSLEHIAAALN 473
            E   +  AV E SAT+  +A N  ST +  +    Q  + +  +  A   +  +   +N
Sbjct: 319 LETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVN 378

Query: 474 STATVINTLGQRSQEIGGIVGVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRN 533
            T+  +  L Q++ +I  ++ VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+
Sbjct: 379 QTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRS 438

Query: 534 LASRTREATDEISGMIQSIQQETGNAISTMERGNVLMQEGLSRNADVASALARIDEQSRS 593
           LASRT+ +T EI  M+ ++ Q    A+ +M       ++    +  +  +LA I +    
Sbjct: 439 LASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIKESLAGISKAVSL 498

Query: 594 AGQQFAAITTATQEQSSTATLLSSNLQSIALANSEQREVVSNLAITAKELETLAAGLRH 652
                    +A ++QS+ A  ++ NL +I       +++V+ L+ + K+ E+++A L H
Sbjct: 499 IHDMGIQTASAAEQQSAVAEDINQNLVAI-------QQIVNELSESFKQTESVSASLSH 550