Pairwise Alignments

Query, 222 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 233 a.a., amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  140 bits (353), Expect = 2e-38
 Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 11/228 (4%)

Query: 1   MAYQFDFVPVLANT--DLLLRGALFTLELTAIGAILGVALGTVGAVVRAWKIQPFAWCFG 58
           M Y FD+  VL+    D +++G + T +L+ +  +L + LGT+ AV+R   ++PF W   
Sbjct: 1   MQYTFDWNLVLSGERLDWIVQGVITTCQLSGLSLVLAMLLGTLIAVMRLSGVRPFVWFSV 60

Query: 59  VYVELIRNTPFLVQLFFIFFG----LPS-----LGLKITEWQAAVLAMVINLGAYSTEII 109
            + E  RNTP LVQ+FF +FG    LP      L  +  E+ A V+++ +   A+  E I
Sbjct: 61  AFTEFFRNTPLLVQIFFWYFGSDAVLPDAVNQWLYKQNFEFAAGVISLTVYTAAFIAEEI 120

Query: 110 RAGIQAIPRGQLEAAAALAMTRFEAFRHVVLLPALGKVWPALSSQIIIVMLGSAVCSQIA 169
           R+GI +IPR QLEA+ A  ++  +A  +VVL  A   + P L SQ + +   S++C  I 
Sbjct: 121 RSGIFSIPRTQLEASRACGLSFMQAMSYVVLPQAFRIIVPPLISQALNLFKNSSLCMTIG 180

Query: 170 TEELSFAANFIQSRNFRAFETYALTTLVYLCMALMIRQLLNWIGRRFV 217
             EL++ A  I+S  F  FE + ++TL+YLC++LM+  L+N     F+
Sbjct: 181 VMELTYMARQIESYTFHGFEAFTVSTLIYLCISLMVSLLINLYNTHFL 228