Pairwise Alignments

Query, 371 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (292), Expect = 6e-31
 Identities = 95/376 (25%), Positives = 171/376 (45%), Gaps = 19/376 (5%)

Query: 1   MHKFAHILRLGIKELTSLRHDGVLLLFLFYAFTVAIYMPAAGSVIGVHNASVAFVDEDHS 60
           M+    I  + +KE   L  D +    +     + + +        V N  +  VD+  S
Sbjct: 1   MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDS 60

Query: 61  SLSRQMAEALQPPEFQAPIP--LAYDQLDKVMDSGEYTFVINVPANFQADLLAGRQPGVQ 118
           S SR + E+++  +        L  ++ +K + SG+    + +P++  A     R+ G  
Sbjct: 61  SFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQW 120

Query: 119 -VNVDATAMSQAFMGAGYIGRIFQRELLTYSGQAAANQAPALLTTRALFNTNLEGGWFLA 177
            ++   T ++ A +G        +   LT                  L+N +      + 
Sbjct: 121 LIDGSDTMIAGALLG-------LKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIV 173

Query: 178 VIQIVNNITILAIILTGTALLREREHGTLDHLLVLPLTALEIMLAKIWSNMLVVVLCTWL 237
              +   +T+  I+ T  A++RERE G L+ L+  P+ ++E+M+ KI     V  +   L
Sbjct: 174 PGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKI-----VPYIFVGL 228

Query: 238 SLEVVVKGL----LGVPLAGSLGLFLFVTALYLFASTALGIFLATLARSTPQFGLLAIPV 293
               ++ GL      VP+ G+L   LF T L++ AS  LG+ ++T+A +  Q   + + +
Sbjct: 229 IQVAIILGLGHFIFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFI 288

Query: 294 IIPMLLLSGGSTPLDSMPEWLQWVMQGSPSTHFVSLSAAILFRDAGVSVVWPDVLALAGI 353
           ++P +LLSG   P + MP   QW+ +  P+THF+ L   I+ R A ++ +W D L LA  
Sbjct: 289 LLPSILLSGFMFPYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALF 348

Query: 354 GLLFFAVALARFRKSL 369
            L    +A  RF+KSL
Sbjct: 349 TLFGLMLAALRFKKSL 364