Pairwise Alignments

Query, 321 a.a., hemolysin secretion protein D from Pseudomonas simiae WCS417

Subject, 324 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 26/281 (9%)

Query: 40  SMGNGRLESTEVQIAAKIPGRLAEVRVDEGDKVLKGQLLARMDTRTLEAQRAQAE----- 94
           S+  G++E+ E  +++K+PGR+ +V V  GD V +G LL  + +  L+A+  QAE     
Sbjct: 32  SVLQGQIEAREYNVSSKVPGRVEQVLVRRGDSVNEGDLLFAIHSPELDAKLMQAEGGRDA 91

Query: 95  AEVLRAKENFAAAEANVQLRQSEQL-------LANQELRRTQELYKRGFASSQLID---- 143
           A+ L+ + N  A    V   + + L       LA     R + L+  G A+ Q  D    
Sbjct: 92  AKALQQEANNGARSQEVMAAKEQWLKAQAAATLAKTTYTRVENLFAEGVAARQKRDEAFT 151

Query: 144 QQQARQNTGNAAVVAAQ-----AQVASVKAAIG---AAQAQVAQLTSEIDDSSLRAPIDG 195
           Q QA + T  AA+   Q     A+V +  AA G    A+  V ++++ + DS +RAP  G
Sbjct: 152 QWQAAKYTEQAALAMYQMAEEGARVETKAAAAGNARMAEGAVKEVSAIMADSQMRAPKSG 211

Query: 196 IIQLRLAEPGEVLGAGGRVLLLIDPNDQYMNLYLPASVTGRLTVGSDARILLDALPDQPL 255
            I   L + GE+  +G  V+ LID  D +    +      R   G   ++ L AL D+ L
Sbjct: 212 EISEVLLQAGELAPSGFPVVSLIDMQDAWAVFQVREDQLKRFKKGDKLQLTLPAL-DKTL 270

Query: 256 PAKISFVAAKSQF-TPKEVETRDERQKLVFRVKLRLTQPSA 295
              +S ++    F T +  E+  +     F V+LR T P A
Sbjct: 271 EFTVSHISVMGDFATWRSTESGHDFDMRTFEVELRPTAPIA 311