Pairwise Alignments

Query, 559 a.a., type II secretion system protein E from Pseudomonas simiae WCS417

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  330 bits (846), Expect = 8e-95
 Identities = 191/484 (39%), Positives = 297/484 (61%), Gaps = 43/484 (8%)

Query: 80  VVPLMSHAFAQRHAILAVAVDAQTVTVASAQPHVTSWEAGLSQVLKRSIKRVVANPQDIT 139
           + PL   A  +   ++  A   Q + ++ A+     +E+ L+QV +R         +DI 
Sbjct: 43  LAPLSMEALVETKRVVKHAF--QLIELSQAE-----FESKLTQVYQRDSSEARQLMEDIG 95

Query: 140 RCIGEFYRLAKSVSGADQKVVAAGNVDLLNLGAREQEPDANDAHIVNIVDWLLQYAFAQR 199
               +F+ LA+ +           N DLL           +DA I+ +++ +L  A  + 
Sbjct: 96  ADSDDFFSLAEELPQ---------NEDLLE--------SEDDAPIIKLINAMLGEAIKEG 138

Query: 200 ASDIHIEPCREQGRVRFRIDGLLHDVYQFPPQVTMAVVSRLKSLGRMNVAEKRRPQDGRV 259
           ASDIHIE   +   +RFR+DG+L +V     +++  +VSR+K + ++++AEKR PQDGR+
Sbjct: 139 ASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRI 198

Query: 260 KTKSPTGAEVELRLSTLPTAFGEKLVLRIFDPQVLLKGFDQLGLSADDQRRWQSMTRQTH 319
             +   G  V++R+ST+P++ GE++V+R+ D          LG++A +   ++ + ++ H
Sbjct: 199 SLRIG-GRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPH 257

Query: 320 GIILVTGPTGSGKTSTLYTTLRQLATREVNLCTVEDPIEMVEPTFNQMQVQHNIDLTFAS 379
           GIILVTGPTGSGK++TLY  L++L + E N+ TVEDPIE       Q QV   +D+TFA 
Sbjct: 258 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFAR 317

Query: 380 GIRALLRQDPDIIMIGEIRDQETAEMAIQAALTGHLVLSTLHTNDAPSAISRLQELGIAH 439
           G+RA+LRQDPD++M+GEIRD ETA++A+QA+LTGHLV+STLHTN A  A++RL+++GI  
Sbjct: 318 GLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEP 377

Query: 440 YLIKATLLGVMAQRLVRVLCPHCK---------RTLGDA--------HEAVGCGECRQSG 482
           +LI ++LLGV+AQRLVR LCP CK         R L D+        + A GC +C   G
Sbjct: 378 FLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCNHKG 437

Query: 483 YRGRAGVYEIMVLNEALKTLITPGADLHALRQKAIAQGMCSLRMAGVKKVEAGLTTMAEV 542
           YRGR G++E++++++AL+ LI   A   A+ +K I     S+R  G+ KV  G+T++ EV
Sbjct: 438 YRGRTGIHELLLVDDALQELIHSEAGEQAM-EKHIRATTPSIRDDGLDKVRQGITSLEEV 496

Query: 543 LRVT 546
           +RVT
Sbjct: 497 MRVT 500