Pairwise Alignments

Query, 559 a.a., type II secretion system protein E from Pseudomonas simiae WCS417

Subject, 520 a.a., general secretion pathway protein E (RefSeq) from Shewanella amazonensis SB2B

 Score =  338 bits (867), Expect = 3e-97
 Identities = 180/383 (46%), Positives = 266/383 (69%), Gaps = 18/383 (4%)

Query: 180 NDAHIVNIVDWLLQYAFAQRASDIHIEPCREQGRVRFRIDGLLHDVYQFPPQVTMAVVSR 239
           +DA I+ +++ LL  A  + ASDIHIE   +Q  VRFR+DG+L +V +   +++  +VSR
Sbjct: 137 DDAPIIRLINALLSEAIKEEASDIHIETYEKQLVVRFRVDGVLKEVLKPNRKLSSLLVSR 196

Query: 240 LKSLGRMNVAEKRRPQDGRVKTKSPTGAEVELRLSTLPTAFGEKLVLRIFDPQVLLKGFD 299
           +K + R+++AEKR PQDGR+  +   G  V++R+ST+P++ GE++VLR+ D         
Sbjct: 197 IKVMARLDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLA 255

Query: 300 QLGLSADDQRRWQSMTRQTHGIILVTGPTGSGKTSTLYTTLRQLATREVNLCTVEDPIEM 359
           QLG++   + ++  + R+ HGI+LVTGPTGSGK++TLY  L ++ +R+ N+ TVEDPIE 
Sbjct: 256 QLGMTETIREQFDELIRKPHGILLVTGPTGSGKSTTLYAGLTEINSRDTNILTVEDPIEY 315

Query: 360 VEPTFNQMQVQHNIDLTFASGIRALLRQDPDIIMIGEIRDQETAEMAIQAALTGHLVLST 419
                 Q QV   +D+TFA G+RA+LRQDPD++MIGEIRD ETA++A+QA+LTGHLV+ST
Sbjct: 316 ELEGIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVIST 375

Query: 420 LHTNDAPSAISRLQELGIAHYLIKATLLGVMAQRLVRVLCPHCK---------RTL---- 466
           LHTN A  AI+RLQ++G+  +L+ ++LLGV+AQRLVR LCP CK         R L    
Sbjct: 376 LHTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLVRTLCPSCKAPHVPDERERELLGIG 435

Query: 467 -GDA--HEAVGCGECRQSGYRGRAGVYEIMVLNEALKTLITPGADLHALRQKAIAQGMCS 523
            GDA  + A GC  C  +GYRGR G++E++++++ ++ LI  G    A+ +K I Q + S
Sbjct: 436 GGDAVIYRATGCKACGHNGYRGRTGIHELLLVDDTVRELIHGGRGELAI-EKYIRQSVPS 494

Query: 524 LRMAGVKKVEAGLTTMAEVLRVT 546
           +R  G++KV AG+TT+ EVLRVT
Sbjct: 495 IRHDGMQKVLAGITTLEEVLRVT 517