Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  332 bits (851), Expect = 1e-95
 Identities = 188/445 (42%), Positives = 254/445 (57%), Gaps = 50/445 (11%)

Query: 15  IAQQAGAAGFVEDSKATLGLRNFYINTDNRNGTGANKNEEWGQGFDLRFISGYTQGTVGF 74
           IA    +A FVEDSKA++ LRNFY+N D R+G G +K EEW QGF L+  SGYT+G +GF
Sbjct: 19  IATGPASAAFVEDSKASIDLRNFYMNRDFRSGDGQSKAEEWAQGFMLKMESGYTEGPIGF 78

Query: 75  GVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSEHN--GKAVNDYSSLGLTAKA 132
           GVDAIGLLGV+LDS             +P   G  I  S+     +A +DY S G+TAKA
Sbjct: 79  GVDAIGLLGVKLDS-------------SPDRVGTGILQSDREAPNRAQDDYGSAGITAKA 125

Query: 133 KISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIKDLTLVGGQIEKAKGRNSS 192
           K+S T L +GTLQP LPV++ ND RLLPQT++G  + + +I  LTL  G++++   RNSS
Sbjct: 126 KLSATTLHVGTLQPILPVVMRNDSRLLPQTYRGAWLQSKEIDGLTLDLGKLDRVNQRNSS 185

Query: 193 SNENLSLSGANSRGATW---RDSNKFIYAGGDYKITKDLTAQYYYGNLEDFYKQHFLGLT 249
            NE ++      R   +     S++F++AG  Y  + +L+  YYYG L+  YK+H  GL 
Sbjct: 186 DNEEMTAFNGGRRNIQFGRQTSSDEFLFAGARYAWSPELSTSYYYGGLDGIYKEHNFGLV 245

Query: 250 HNWAIG-PGVLKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKGKVDNNLYSGLFLYT 308
           H   +G     KSDLRY + +DDG +                     VD + +  +F Y 
Sbjct: 246 HVLPLGDKQSFKSDLRYVHQTDDGGS--------------------NVDADAFGAMFTYK 285

Query: 309 VAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGERTWQARYAYDFAKV 368
           + GH FG GYQ  NG + F ++   D S   L   +QI  F    ER+WQ RY YDFA +
Sbjct: 286 LGGHAFGAGYQQLNGDTGFAYIAGSDNS---LVNLVQINDFGNEDERSWQVRYDYDFAAM 342

Query: 369 GVPGLTAGVVYLKGSDIDTVANTASRTQFNGQSEWERDITVAYVIPEGPLKNLGVAWKNA 428
           G+PGL+    YL G ++D  A  +          WER+  +AYV   GPLKNLG+  +NA
Sbjct: 343 GIPGLSLMTRYLSGDNVDRGAGASE------GKTWERNTDIAYVFQSGPLKNLGLRLRNA 396

Query: 429 MWRTDIAGARDQDENRLIVSYSIPL 453
             R++     D DENR IVSYS+PL
Sbjct: 397 TTRSNFGS--DLDENRFIVSYSLPL 419