Pairwise Alignments

Query, 454 a.a., porin from Pseudomonas simiae WCS417

Subject, 441 a.a., outer membrane porin from Pseudomonas syringae pv. syringae B728a

 Score =  224 bits (572), Expect = 3e-63
 Identities = 156/463 (33%), Positives = 223/463 (48%), Gaps = 46/463 (9%)

Query: 4   STLALAVALGAIAQQAGAAGFVEDSKATLGLRNFYINTDNRNG----TGANKNEEWGQGF 59
           STLA    + A+A++    GF+E S  T+  RNFY+N D+RNG    TG   +E W QG 
Sbjct: 13  STLAGVTPITALAEEQ-KEGFIEGSTLTVLNRNFYMNRDHRNGESSPTGNGYSEAWAQGI 71

Query: 60  DLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSEHNGKA 119
             RF SG+TQGT G GVDA  ++G++LD+G G NG         G     + P +  G A
Sbjct: 72  IGRFQSGFTQGTFGVGVDAFAMIGIKLDTGDGRNG---------GRSAFDVLPVDGQGNA 122

Query: 120 VNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIKDLTLV 179
            ++YS +G + KA+   T + +G + P  PV+   D RLLP++F+G     N I  LTL 
Sbjct: 123 RDEYSKVGGSLKARAFDTVVNVGDVFPSTPVVAFGDSRLLPESFRGVTAINNSISGLTLQ 182

Query: 180 GGQIEKAKGRNSSSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDLTAQYYYGNLED 239
           GG++       SS   NL        G    DS    Y GGDY+ T  L+   Y   L+D
Sbjct: 183 GGRLHSMSQPVSS---NLRDGFVTFYGGA-VDSPWVAYFGGDYQATDRLSLGLYTSRLKD 238

Query: 240 FYKQHFLGLTHNWAIGPGV-LKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKGKVDN 298
            + Q +   ++   +   + L   L Y+N++D+G                 +   G+ DN
Sbjct: 239 AWDQKYASASYVLPLSDDLALTGSLNYYNATDEG-----------------KKLLGEFDN 281

Query: 299 NLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGERTWQ 358
           +++S         HT    +Q + G  DF +L Q D  S YL   +Q   F    ER+W 
Sbjct: 282 DIWSAKLALQYGAHTLSLSHQRNEGDDDFDYLRQSD--SIYLANSIQYSDFNSPKERSWM 339

Query: 359 ARYAYDFAKVGVPGLTAGVVYLKGSDID-TVANT------ASRTQFNGQSEWERDITVAY 411
             Y  D +  GVPGL+    Y KG+D D + AN+      A       Q  WERDI   Y
Sbjct: 340 VTYNLDMSTFGVPGLSFMTRYGKGTDADYSNANSTYMRRDAQGNPLTDQKRWERDIEAKY 399

Query: 412 VIPEGPLKNLGVAWKNAMWRTDIAGARDQDENRLIVSYSIPLL 454
           ++  G LK+L +  + A  R   A   D DE R+IV Y + +L
Sbjct: 400 IVQTGSLKDLSLRVRQATTRA-TAFESDLDEVRVIVEYPLSVL 441