Pairwise Alignments

Query, 364 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  162 bits (410), Expect = 1e-44
 Identities = 103/307 (33%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 32  NWSDYIGTDTLANFEKASGIKPVYDVFDSNETLEGKLLAGRTGYDVVVPSNHFLGKQIKA 91
           NW  YI +  L  F K +GIK +Y  ++SNETL  KL     GYD+VVPS +F+ K    
Sbjct: 33  NWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKLKTHNQGYDLVVPSTYFVAKMRDE 92

Query: 92  GAFQKLDKSLLTNYANLDPALLKRLEKNDPGNQYAVPYLWGTNGIGYNGDKGKEVLGVDH 151
           G  QK+DKS L+N+ NLD   L +    DP N Y++P++    G+  N D    +   + 
Sbjct: 93  GMLQKIDKSKLSNFKNLDSNYLDK--PYDPNNDYSIPHVVAITGLAVNTD----MYDPND 146

Query: 152 IDSWAVLFEPENMKKLATCGVSFMDSADEMLPAVLNYMGLNPNSTNPDDYKKAEEKLLKV 211
             SW  L++PE   +L       MD   E+    L  +G + NST+     +A  +L K+
Sbjct: 147 FQSWGDLWKPELKGQL-----MLMDDTREVFHIALRKLGYSGNSTDDKQIDEAYAELQKL 201

Query: 212 RPYVTYFHSSKYISDLANGNICVAAGFSGDVFQAKARAAEAGKGVNIAYTIPKEGGNLWF 271
            P V  F+S    +   +G + +   ++G      + AA   +G+ I    PKEGG  W 
Sbjct: 202 MPNVLVFNSDNPAAPYLSGEVGLGMLWNG------SAAAAQKEGLPIKLVFPKEGGIGWV 255

Query: 272 DVLAIPKDATNVKEAHAFINYLLQPEVIAQVSDYVGYANPNPGADKLMEQSIRTDEAVYP 331
           D  AI   A NV  AH  I++LL+PE+  Q+S   GY        K      +    ++P
Sbjct: 256 DNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGYLT----GVKASNDKFQDVAPLFP 311

Query: 332 PQAVLDR 338
            Q  LDR
Sbjct: 312 SQEDLDR 318