Pairwise Alignments

Query, 364 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  203 bits (517), Expect = 5e-57
 Identities = 113/337 (33%), Positives = 186/337 (55%), Gaps = 18/337 (5%)

Query: 1   MPISLFRKAMLVGAGITLTLSVQAAPTVHIYNWSDYIGTDTLANFEKASGIKPVYDVFDS 60
           M   LF  A+   A  T T ++     ++ YNWS+YI ++ L +F K +GIK +Y  ++S
Sbjct: 1   MKNKLFASALCAAALFT-TNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYES 59

Query: 61  NETLEGKLLAGRTGYDVVVPSNHFLGKQIKAGAFQKLDKSLLTNYANLDPALLKRLEKND 120
           NE++  KL     GYD+VVPS +F+ K  K G  Q++D S L+++ +LDP  L +    D
Sbjct: 60  NESMYAKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNK--PFD 117

Query: 121 PGNQYAVPYLWGTNGIGYNGDKGKEVLGVDHIDSWAVLFEPENMKKLATCGVSFMDSADE 180
           PGN++++PY+WG  GIG N D    +L    + +W  L++ +   +L       MD A E
Sbjct: 118 PGNKFSIPYIWGATGIGINTD----MLDKKSLKNWGDLWDAKWAGQL-----MLMDDARE 168

Query: 181 MLPAVLNYMGLNPNSTNPDDYKKAEEKLLKVRPYVTYFHSSKYISDLANGNICVAAGFSG 240
           +    L+ +G +PN+TNP + K A  +L K+ P V  F+S    +    G + +   ++G
Sbjct: 169 VFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNG 228

Query: 241 DVFQAKARAAEAGKGVNIAYTIPKEGGNLWFDVLAIPKDATNVKEAHAFINYLLQPEVIA 300
             + A+       +G  I    P++G   W D ++IP  A N++ AH  I++LL+PE  A
Sbjct: 229 SAYMARQ------EGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAA 282

Query: 301 QVSDYVGYANPNPGADKLMEQSIRTDEAVYPPQAVLD 337
           +++  +GY  P   A  L+ +    D ++YPPQ+V+D
Sbjct: 283 KIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVID 319