Pairwise Alignments

Query, 294 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas simiae WCS417

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (512), Expect = 1e-56
 Identities = 103/249 (41%), Positives = 162/249 (65%), Gaps = 12/249 (4%)

Query: 3   RFSFSSFMLVAGLLFIYLPMLILVIYSFNESKLVTVWGGWSIKWYVGLLDNTQLMGSVAR 62
           RFSF S +     LF+YLP+++L+  SFNE+K    WGG++ KWY  L++N  LM +   
Sbjct: 6   RFSFMSLVY----LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWH 61

Query: 63  SLEIACYTAVAAVALGTLAAFVLTRISQFKGRTLFGGLVTAPLVMPEVITGLSLLLLFVA 122
           S+ +A ++A AA  +G+L A  L R  QFKG+ +  G++   ++ P+++  +SLL LF+ 
Sbjct: 62  SINVAVFSATAATLIGSLTAVALFRY-QFKGKKVVSGMLFVVMMSPDIVMAISLLALFLV 120

Query: 123 MAQMIGWPQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFFL 182
           M   +G+       T+ IAH TFC  +V V V  RL   D+ + EAA DLGA  W +   
Sbjct: 121 MGAKLGF------FTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKK 174

Query: 183 ITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVAS 242
           I +P+  P++AAG ++SF LSLDD++++SFV+GP    LP++++S V++G+ PE+NA+A+
Sbjct: 175 IILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT 234

Query: 243 LILLAVSLV 251
            ++L VSLV
Sbjct: 235 -VMLVVSLV 242