Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  107 bits (267), Expect = 4e-28
 Identities = 79/266 (29%), Positives = 140/266 (52%), Gaps = 14/266 (5%)

Query: 18  EAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYGLAQA 77
           + Y+  +   PLLT E+E   A       D  A ++M+ ++LR VV I+R YS  GLA  
Sbjct: 60  QMYLSEIGFSPLLTAEEEVLYARRAL-RGDEAARKRMIESNLRLVVKISRRYSNRGLALL 118

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++      ++L 
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELN 177

Query: 138 FNLRSQKKRLAWLNNEEV-HRVAESLGVEPREVREMESRLTGHDMAFDPAAEADDDSAFQ 196
             LR+ ++    L++E     +A  L     +V +M  RL     + D     D D A  
Sbjct: 178 IYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKAL- 235

Query: 197 SPANYLED-HRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRW--LAEEKATL 253
              + L D H  DP    +D    D+   +L   L+ L+ + +++L +R+  L  E +TL
Sbjct: 236 --LDILPDSHNADPEFSTQD----DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTL 289

Query: 254 HDLAQKYNVSAERIRQLEKSAMNKLK 279
            ++ ++ N++ ER+RQ++   + +L+
Sbjct: 290 EEVGREINLTRERVRQIQVEGLRRLR 315