Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 286 a.a., RNA polymerase sigma factor RpoH from Vibrio cholerae E7946 ATCC 55056

 Score =  341 bits (874), Expect = 1e-98
 Identities = 175/284 (61%), Positives = 215/284 (75%), Gaps = 3/284 (1%)

Query: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLR 60
           MT    P  ALV   +L++Y+ +VN  P+L+ ++ERELAE L+Y+ D+ AA+ ++L+HLR
Sbjct: 1   MTNQAYPM-ALVSQDSLDSYIRSVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLR 59

Query: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120
           FVVH+AR YSGYGL  ADL+QEGN+GLMKAVKRFNPEMGVRLVSFAVHWIKAEIHE++LR
Sbjct: 60  FVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYVLR 119

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHD 180
           NWRIVK+ATTKAQRKLFFNLR  KKRL W NN EV  VA  LGVEP EVREMESRL   D
Sbjct: 120 NWRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPAEVREMESRLAAQD 179

Query: 181 MAFDPAAEADDDS-AFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRD 239
            AF+ +AE D++  A+ +P  YLED   D A  LE  +W  ++   L  AL  LD+RS+ 
Sbjct: 180 AAFEMSAEDDENGMAYTAPVLYLEDKHSDLADNLEAENWEAHTTQRLSMALASLDERSQH 239

Query: 240 ILYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKLSI 282
           I+  RWL ++ K TL DLA+ Y VSAERIRQLEK+AM KLK ++
Sbjct: 240 IVRARWLDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEAV 283