Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 288 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  161 bits (407), Expect = 2e-44
 Identities = 90/263 (34%), Positives = 150/263 (57%), Gaps = 8/263 (3%)

Query: 28  PLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGYGLAQADLIQEGNVGL 87
           P L  ++E  LA++   + D  A  ++ ++H+R V+ +A  +  +GL   DL+QEG++GL
Sbjct: 18  PYLERDEEHALAQAWRNDNDQEARNKIAMSHMRLVISMAAKFRSFGLPMGDLVQEGHIGL 77

Query: 88  MKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRL 147
           ++A  RF P   VR  ++A  WI+A + +++LRNW IV+  T+ AQ+ LFFNLR  + RL
Sbjct: 78  LEAAARFEPSREVRFSTYATWWIRASMQDYVLRNWSIVRGGTSSAQKALFFNLRRLRARL 137

Query: 148 A----WLNNEEVH-RVAESLGVEPREVREMESRLTGHDMAFD-PAAEADDDSAFQSPANY 201
           A     L ++ +H  +A +LGV   +V+ M++RL+G+D +   P    D D+   +  ++
Sbjct: 138 AQGDRQLTSQAMHEEIAAALGVSLADVQTMDARLSGNDASLQAPIGSGDPDAG--ARLDF 195

Query: 202 LEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRWLAEEKATLHDLAQKYN 261
           L      P  Q+ D    + +   L  AL  L +R   I+  R L E+ ATL +L     
Sbjct: 196 LASEAPLPDEQVSDLIDGERARRWLQVALGELSEREMKIIRARRLTEDGATLEELGVALG 255

Query: 262 VSAERIRQLEKSAMNKLKLSIAA 284
           +S ER+RQ+E  A+ KL+ ++ A
Sbjct: 256 ISKERVRQIETRALEKLRAALTA 278