Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score = 87.8 bits (216), Expect = 6e-22
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 50  AARQMVLAHLRFVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHW 109
           A ++MV A+LR V+ IA+ Y+  GL   DLIQEGN+GLMKAV +F    G +  ++A  W
Sbjct: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505

Query: 110 IKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEV-HRVAESLGVEPRE 168
           I+  I   I    R +++     +  +   +R+ ++ L  +  E     +AE L +   +
Sbjct: 506 IRQAITRSIADQARTIRIPVHMIE-TINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEK 564

Query: 169 VREMESRLTGHDMAFDPAAEADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHE 228
           VR++  ++    ++ +     ++DS      +++ED     A    DA    N       
Sbjct: 565 VRKV-LKIAKEPISLETPVGDEEDSHL---GDFIEDKN---ALLPIDAAIQANLRETTTR 617

Query: 229 ALEVLDDRSRDILYQRW--LAEEKATLHDLAQKYNVSAERIRQLEKSAMNKLK 279
            L  L  R   +L  R+        TL ++ Q+++V+ ERIRQ+E  A+ KLK
Sbjct: 618 VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670