Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 301 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  185 bits (470), Expect = 9e-52
 Identities = 110/287 (38%), Positives = 163/287 (56%), Gaps = 8/287 (2%)

Query: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLR 60
           M  +  P  A   G  L  Y+  +   P+L P++E  LA+      D  AA ++V +HLR
Sbjct: 1   MARNTLPTIAAGEGG-LNRYLDEIRKFPMLEPQEEYMLAKRYQEHDDRKAAHKLVTSHLR 59

Query: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120
            V  IA  Y GYGL   ++I EGNVGLM+AVK+F P+ G RL ++A+ WIKA I E+ILR
Sbjct: 60  LVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPDRGFRLATYAMWWIKAAIQEYILR 119

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNN-----EEVHRVAESLGVEPREVREMESR 175
           +W +VK+ TT  Q++LFFNLR  K R+  L+      E+V  +A +L V   EV  M  R
Sbjct: 120 SWSLVKMGTTANQKRLFFNLRRLKGRIQALDEGDLKPEQVKEIATTLKVSEEEVVSMNRR 179

Query: 176 LTGHDMAFDPAAEADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDD 235
           L+G      P   ++ DS      ++L D   +  + L + D  ++    L  A++VL+D
Sbjct: 180 LSGDASLNAPIKASEGDSG--QWQDWLVDDHDNQEQILIEQDELESRRALLANAMKVLND 237

Query: 236 RSRDILYQRWLAEEKATLHDLAQKYNVSAERIRQLEKSAMNKLKLSI 282
           R R I   R L EE  TL DL+ ++++S ER+RQ+E  A  K++ ++
Sbjct: 238 RERRIFEARRLTEEPITLEDLSTEFDISRERVRQIEVRAFEKVQEAV 284