Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 616 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 50  AARQMVLAHLRFVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHW 109
           A ++MV A+LR V+ IA+ Y+  GL   DLIQEGN+GLMKAV +F    G +  ++A  W
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437

Query: 110 IKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREV 169
           I+  I   I    R +++     +     N  S++             +AE + +   ++
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKI 497

Query: 170 REMESRLTGHDMAFDPAAEADDDSAFQSPANYLEDHRYDPARQLE-DADWSDNSNHNLHE 228
           R++  ++    ++ +     D+DS       +L D   D   +L  D+   ++  +  HE
Sbjct: 498 RKV-LKIAKEPISMETPIGDDEDS-------HLGDFIEDTTLELPLDSATGESLKNATHE 549

Query: 229 ALEVLDDRSRDILYQRWLAEEKA--TLHDLAQKYNVSAERIRQLEKSAMNKLK 279
            L  L  R   +L  R+  +     TL ++ ++++V+ ERIRQ+E  A+ KL+
Sbjct: 550 VLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602