Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 326 a.a., RNA polymerase sigma-38 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (262), Expect = 1e-27
 Identities = 81/270 (30%), Positives = 142/270 (52%), Gaps = 15/270 (5%)

Query: 16  NLEA---YVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVVHIARSYSGY 72
           NL+A   Y+  +   PLL+ E+E   +       +    R M+ ++LR VV IAR Y+  
Sbjct: 50  NLDATQLYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRNR-MIESNLRLVVKIARRYNNR 108

Query: 73  GLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKA 132
           GLA  DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   I+   R +++     
Sbjct: 109 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHV 167

Query: 133 QRKLFFNLRSQKKRLAWLNNE-EVHRVAESLGVEPREVREMESRLTGHDMAFDPAAEADD 191
            ++L   LR+ ++    L++E     +AE L V   +V  M  +L     + D     D+
Sbjct: 168 VKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVDVSRM-LKLNEKITSVDVPLGGDN 226

Query: 192 DSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRDILYQRW--LAEE 249
           D A        +D    P  +++D D S++    L+E    L+ + R++L +R+  L  E
Sbjct: 227 DKALLDV--LADDDNVGPDYKVQDEDISNSVVKWLNE----LNTKQREVLARRFGLLGYE 280

Query: 250 KATLHDLAQKYNVSAERIRQLEKSAMNKLK 279
            +TL D+  +  ++ ER+RQ++  A+ +L+
Sbjct: 281 PSTLEDVGAEIGLTRERVRQIQVEALKRLR 310