Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.5 bits (223), Expect = 8e-23
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 11/233 (4%)

Query: 50  AARQMVLAHLRFVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHW 109
           A ++MV A+LR V+ IA+ Y+  GL   DLIQEGN+GLMKAV +F    G +  ++A  W
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437

Query: 110 IKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREV 169
           I+  I   I    R +++     +     N  S++             +AE + +   ++
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKI 497

Query: 170 REMESRLTGHDMAFDPAAEADDDSAFQSPANYLEDHRYDPARQLE-DADWSDNSNHNLHE 228
           R++  ++    ++ +     D+DS       +L D   D   +L  D+  S++     HE
Sbjct: 498 RKV-LKIAKEPISMETPIGDDEDS-------HLGDFIEDTTLELPLDSATSESLKSATHE 549

Query: 229 ALEVLDDRSRDILYQRWLAEEKA--TLHDLAQKYNVSAERIRQLEKSAMNKLK 279
            L  L  R   +L  R+  +     TL ++ ++++V+ ERIRQ+E  A+ KL+
Sbjct: 550 VLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602