Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

Subject, 285 a.a., RNA polymerase sigma factor RpoH from Enterobacter sp. TBS_079

 Score =  341 bits (875), Expect = 9e-99
 Identities = 172/286 (60%), Positives = 221/286 (77%), Gaps = 3/286 (1%)

Query: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLR 60
           MT  +Q   AL P  NLE+Y+   N+ P+LT E+E+ELAE L+Y+ DL AA++++L+HLR
Sbjct: 1   MTKEMQ-TLALAPVGNLESYIRAANTWPMLTAEEEKELAEKLHYQGDLEAAKKLILSHLR 59

Query: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120
           FVVHIAR+Y+GYGL QADLIQEGN+GLMKAV+RFNPE+GVRLVSFAVHWIKAEIHE++LR
Sbjct: 60  FVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLR 119

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHD 180
           NWRIVKVATTKAQRKLFFNLR  K+RL W N +EV  VA  LGV  ++VREMESR+   D
Sbjct: 120 NWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREMESRMAAQD 179

Query: 181 MAFDPAAEAD-DDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRD 239
           M FD +++ D  DS   +P  YL+D   + A  +E+ +W D + + L  A+E LD+RS+D
Sbjct: 180 MTFDMSSDDDGSDSQPMAPVLYLQDKTSNFADGIEEDNWEDQAANKLTSAMEGLDERSQD 239

Query: 240 ILYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKLSIAA 284
           I+  RWL E+ K+TL +LA +Y VSAER+RQLEK+AM KL+ +I A
Sbjct: 240 IIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA 285