Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 452 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  380 bits (977), Expect = e-110
 Identities = 205/412 (49%), Positives = 277/412 (67%), Gaps = 12/412 (2%)

Query: 7   IDIKKSVVDTVLAGLISLVVFGPIVGV--VLDGYSFNLEPA--RVALLVAIVMVGRFAMS 62
           +++ K + ++++   ++ V+F P + +     G    +E         V  V +GR A+ 
Sbjct: 22  VNVPKLIKESLITAALAAVLFLPFIALHATSSGAGLFIEQRWETWGWSVLTVFIGRIALV 81

Query: 63  LFLQTPKGVKILQGFESTGSGVHVLAPDYKSRLRWIIPALIVIAIVFPI--FANKYLLTV 120
           ++   P         +S    V  +   ++  + +I  A +V+AIVFPI  F+N+Y + V
Sbjct: 82  IWRDNPSNRLHDALLKSV---VMPVGGFFRRNMAFIGLAALVLAIVFPITPFSNRYYVDV 138

Query: 121 VILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLPLAAIA 180
               +IY++LG GLNIVVGLAGLLDLGYVAFYA+GAY  AL  Q  G  FW  LPLA + 
Sbjct: 139 ATTWMIYIMLGWGLNIVVGLAGLLDLGYVAFYAVGAYSYALLSQTFGWSFWVCLPLAGVF 198

Query: 181 AALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMP-VPSPTFLGLE 239
           AA  G +LGFPVLR+ GDYLAIVTLGFGEIIR+VL NW + T GP+G+  +  P+F GL+
Sbjct: 199 AAFFGVVLGFPVLRLRGDYLAIVTLGFGEIIRVVLLNWYAVTNGPDGISGIERPSFFGLD 258

Query: 240 FGKRAKDGGIPFHEFFGIDYNPNIKFLFI-YIVLFLVVLAVLYIKHRLTRMPVGRAWEAL 298
           F + A +GG  FH+FFGI Y+P+ + +F+ Y++L L VL  ++   R+ R+PVGRAWEAL
Sbjct: 259 FARTAPEGGETFHQFFGISYSPDHRVIFLFYLILALAVLTNIFTG-RIRRLPVGRAWEAL 317

Query: 299 REDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIV 358
           REDEIACRS+G+N   VKLSAF +GA   G AG FFA+ QGF++P SFTF ESA+ILAIV
Sbjct: 318 REDEIACRSLGINPTNVKLSAFALGAMFGGFAGSFFATRQGFISPESFTFMESAVILAIV 377

Query: 359 VLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVVMMIWRPRGLI 410
           VLGGMGS +GVVIAAF L V PE+ R F ++R+  FG  MV +M+WRPRGL+
Sbjct: 378 VLGGMGSQIGVVIAAFFLVVLPEVFREFDQFRMFFFGAAMVAVMVWRPRGLL 429