Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 361 a.a., putative high-affinity branched-chain amino acid transport system permease protein LivM from Phaeobacter inhibens DSM 17395

 Score =  143 bits (360), Expect = 1e-38
 Identities = 100/338 (29%), Positives = 164/338 (48%), Gaps = 41/338 (12%)

Query: 87  LAPDYKSRLRWIIPALIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDL 146
           L PD  S L  +  AL+++A+  P+  N++ +  V   LI+ + GLGL ++ G  G   L
Sbjct: 15  LFPDRHSLL--VYGALVMLALALPLLINEFYIGEVTNVLIWAIAGLGLMLLTGQTGQASL 72

Query: 147 GYVAFYAIGAYGLALGYQYLGLGFWTVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLG 206
           G+ AF AIG Y   +  +  GL F    PLA +   + G I+  P LR+HG YLAI T+ 
Sbjct: 73  GHAAFLAIGCYANTILIEQ-GLPFIVAFPLAGVITGIVGGIIAIPALRLHGIYLAIATIA 131

Query: 207 FGEI---IRLVLNNWLSFTGGPNGMPVPSPTFLGLEFGKRAKDGGIPFHEFFGIDYNP-N 262
              +   I ++L  W   TGG +G     P  + L                FGI+     
Sbjct: 132 LSILADDIIVLLEPW---TGGVSGK---FPDVIRL----------------FGIEIERWT 169

Query: 263 IKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTI 322
           +   F Y+V  + V+  L+ ++ L R P+GRA+ A+R+ E++  +MG++    K +AF +
Sbjct: 170 MPVRFYYLVFGVTVICTLFYRN-LLRSPLGRAFAAVRDSEVSATAMGVHIARTKATAFGL 228

Query: 323 GASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPEL 382
                G AG     Y G  N  +F+   S  +L ++V+GG+GS  G    A V+   P+ 
Sbjct: 229 SCMITGWAGALMGYYAGAFNNETFSLVISITLLMMIVIGGLGSIHGAFFGAVVVAFLPQG 288

Query: 383 LRSFSE-----------YRVLLFGVLMVVMMIWRPRGL 409
           L    +               +FG+++++ +++ P GL
Sbjct: 289 LSILKDSVLGSGVAIPGLETGVFGMILILFILFEPMGL 326