Pairwise Alignments

Query, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 327 a.a., putative branched-chain amino acid transport system, permease component from Phaeobacter inhibens DSM 17395

 Score =  144 bits (362), Expect = 5e-39
 Identities = 93/337 (27%), Positives = 171/337 (50%), Gaps = 41/337 (12%)

Query: 93  SRLRWIIPALIVIAIVFPIFANK----YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGY 148
           +R + +  A+I++ +  P++A+     +L+T+     I  L G+GLNI +G+ GL+ LG+
Sbjct: 2   NREKLLNAAVILLLLAIPLWAHMTEEPFLITLATKVAILALAGVGLNIALGIGGLVSLGH 61

Query: 149 VAFYAIGAYGLAL----GYQYLGLGFWTVLP-----------LAAIAAALAGCILGFPVL 193
            AF+ IG Y + +       Y  L  W +L            +A +A+ALA  ++G   L
Sbjct: 62  AAFFGIGGYAMGILAAHAQNYEPLAEWPLLIEGTNQMPVIWLVAVVASALAALVIGALSL 121

Query: 194 RMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPVPSPTFLGLEFGKRAKDGGIPFHE 253
           R  G Y  ++TL FG+++     +W ++ GG +G+ +                     +E
Sbjct: 122 RTSGVYFIMITLAFGQMLYYFAISWSAY-GGEDGLSIWVR------------------NE 162

Query: 254 FFGIDYNPNIKFLFIYIVLFLVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHV 313
           F G++    ++F   +++ + ++ A L+   RL R P G A  A R+ E    ++G+   
Sbjct: 163 FPGMNTLAPLQF---FLICYAILCAALWFAARLARAPFGLALSAARQCEARVETVGITPY 219

Query: 314 LVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAA 373
            ++L+AF I  +  GLAG  FA    FV+P+  ++  S  I+  V++GG+G   G VI A
Sbjct: 220 QLRLTAFVISGAITGLAGALFADLNRFVSPTMLSWHTSGEIMIFVIIGGVGRLFGPVIGA 279

Query: 374 FVLTVAPELLRSFSEYRVLLFGVLMVVMMIWRPRGLI 410
            +  +   LL   S+Y  +  G L+++++++   G+I
Sbjct: 280 ALFILLEHLLGGISDYWQIYLGGLLLIIVLYARGGVI 316